PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P16690_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 368aa    MW: 40424.6 Da    PI: 9.4634
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P16690_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.79.7e-065981123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C+k F r  nL+ H r H
  GSMUA_Achr2P16690_001 59 FVCEICNKGFQRDQNLQLHRRGH 81
                           89*******************88 PP
2zf-C2H210.80.0015134156123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC+ C+k +  +s+ k H + +
  GSMUA_Achr2P16690_001 134 WKCERCSKKYAVQSDWKAHSKIC 156
                            58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.1E-55881IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-75881No hitNo description
PfamPF121715.5E-55981IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0175981IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.9495981IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
SMARTSM0035511099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.4E-4122155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.02E-7129154No hitNo description
SMARTSM00355230134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MSNLTSPSGE ASVSSNQLVS LASANPNPVK KKRSLPGNPD PDAEVIALSP KTLMATNRFV  60
CEICNKGFQR DQNLQLHRRG HNLPWKLKQR PKEVRKKVYI CPEVTCVHHD PSRALGDLTG  120
IKKHFSRKHG EKKWKCERCS KKYAVQSDWK AHSKICGTRE YRCDCGTLFS RRDSFITHRA  180
FCDALAEESS RGIPANPMAS HHPLQFSHPS TSLDTFPLQQ TQQQQQHFDQ EYSHDNPADA  240
PPPPPLPPTY QVPASSPHMS ATALLQKAAQ MGATASRPPR IGSFEQASAA SPLLQDMMMN  300
PRPSTPGFDG SFADAFGGML GSKREGNDFM DGAVRSQART DVGGGGGGND GMTRDFLGLR  360
AFFPQGYP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-35130191364Zinc finger protein JACKDAW
5b3h_F3e-35130191364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18596KLKQRPKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399796.11e-173PREDICTED: protein indeterminate-domain 7
RefseqXP_018681837.11e-173PREDICTED: protein indeterminate-domain 7
RefseqXP_018681839.11e-173PREDICTED: protein indeterminate-domain 7
SwissprotQ8H1F51e-124IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM0S8L00.0M0S8L0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P16690_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-114indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]