PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P16610_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C3H

Protein Properties

Length: 338aa MW: 36715.3 Da PI: 7.6464

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P16610_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	27.5	5.6e-09	141	162	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C++f++ G Ck+Gd C FaHg GSMUA_Achr2P16610_001 141 AACPDFRK-GGCKRGDACEFAHG 162 78****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	1.7E-5	137	163	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.178	138	164	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	4.7E-7	141	162	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-5	142	164	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	172	195	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.258	172	196	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence Send to blast
MMMMMTTTTG GDGGQLRYPT VHVPPWSLPF ENMAAGTDYH LTAASGGGGV GGQEFPFEES 60 TFTALQRQLS CKGEETGAEE EDVEEPASAV DVYSSDEFRM YEFKVRRCAR GRSHDWTECP 120 FAHPGEKARR RDPRKYHYSG AACPDFRKGG CKRGDACEFA HGVFECWLHP ARYRTQPCKD 180 GTACRRRVCF FAHTPDQLRH LMSSSPTSTL MSPPISSPSN SPPMSPSTAA LGRASWSVGT 240 SPNEIVASMR QLQLSKAKSA PSSWGFQLGS TLFGSPRGTG TGGGSAEGEE PVERVESGRA 300 LRAKIFEKLS KECCVAKRAE AAPPMPAPDV GWVSELVK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC132486	1e-100	AC132486.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0473H02, complete sequence.
GenBank	AK106392	1e-100	AK106392.1 Oryza sativa Japonica Group cDNA clone:002-102-F01, full insert sequence.
GenBank	AP014961	1e-100	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBank	CP012613	1e-100	CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009388582.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 2-like
Swissprot	O82199	2e-99	C3H20_ARATH; Zinc finger CCCH domain-containing protein 20
TrEMBL	M0S8K2	0.0	M0S8K2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P16610_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29190.1	1e-83	C3H family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Swain S,Singh N,Nandi AK Identification of plant defence regulators through transcriptional profiling of Arabidopsis thaliana cdd1 mutant. J. Biosci., 2015. 40(1): p. 137-46 [PMID:25740148] Singh N,Swain S,Singh A,Nandi AK AtOZF1 Positively Regulates Defense Against Bacterial Pathogens and NPR1-Independent Salicylic Acid Signaling. Mol. Plant Microbe Interact., 2018. 31(3): p. 323-333 [PMID:29327969]