PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P15350_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 324aa    MW: 35350.4 Da    PI: 6.3869
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P15350_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.000372022401255
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            R +++ +++  L +l+ +      +K + a++L +A+ YI+ Lq
  GSMUA_Achr2P15350_001 202 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 240
                            6678889999999999998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.776190239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.78E-6200244No hitNo description
SuperFamilySSF474592.09E-10200252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.8E-7204247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MVQHTMEGST SCWSIIRPHP EHNSSLLSSS SSSSSSSPSV HPQYLHPSSM LPLMTVCHDT  60
QDLPESWSQL LMGGYVGDEE KYISAHLQTK MIANWETQLL CPSTAGHMAD MKQEHFGCHG  120
IEDAQESKYT WNQLLQTFSP RSCVPTSFSR NMVDFSNKRS ERAENQPENP SECNGTATGA  180
VVKKARVLGS SSSTSQSVLK VRKEKLGDRI TALHQLVSPF GKTDTASVLL EAIGYIRFLQ  240
SQIEALSSPY LSSGSGNMKQ PLSNEGGVKR REGGQPDQEG SDEAQKDLRS RGLCLVPVSL  300
ILHADESDAG GDHYWGAPTL HGAF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388717.10.0PREDICTED: transcription factor bHLH68-like isoform X2
SwissprotQ8S3D15e-42BH068_ARATH; Transcription factor bHLH68
TrEMBLM0S8760.0M0S876_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P15350_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2167817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-41bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Le Hir R, et al.
    AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana.
    Physiol Plant, 2017. 160(3): p. 312-327
    [PMID:28369972]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]