PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P15250_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 424aa    MW: 45710.7 Da    PI: 5.7145
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P15250_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.82.5e-28152206156
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                            k++++Wtp+LH+rFv+aveqL G++kA+P++ilelm++++Lt+++v+SHLQkYR++
  GSMUA_Achr2P15250_001 152 KAKVDWTPDLHRRFVQAVEQL-GIDKAVPSRILELMGIDCLTRHNVASHLQKYRSH 206
                            6799*****************.********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.833149208IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-27150209IPR009057Homeodomain-like
SuperFamilySSF466892.51E-18150209IPR009057Homeodomain-like
TIGRFAMsTIGR015576.3E-27152206IPR006447Myb domain, plants
PfamPF002495.9E-7155204IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MLAVEALRGS NGEERDGSSD NFCINGDFTG ETLLEDINFS DLFAGIDDGD MLPGLELDPA  60
ETFAEFSVGW EEDSGSPAVA EATDGMLGGV TQDTVVLDGE KYLSHGEEAT SETTAEDAAS  120
MPSEARSSTP DNGQKSSVAA AAAAKGSQGK RKAKVDWTPD LHRRFVQAVE QLGIDKAVPS  180
RILELMGIDC LTRHNVASHL QKYRSHRKHV LAREAEAASW SQRRQMYATG MGVKRVDVNP  240
WLASTIGFLP PPPPPPPPPV QPFRPLHVWG HPTPEAPVLH MWPRHLSARS PTQPWAPPQP  300
PLPPPPDPSY WHHLYQSGSG EGWVPHTMAK GAPCFPQPLP MVRFAAPPVP GVVPRPMYRA  360
VAPAMTKHPS SQLQLDASPS KESIDAAIGD VLGKPWLPLP LGLKPPSLDG VLVELQRQGV  420
SKVP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16149210263ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:11340194}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009388729.10.0PREDICTED: probable transcription factor GLK1
SwissprotQ5Z5I42e-86GLK1_ORYSJ; Probable transcription factor GLK1
TrEMBLM0S8660.0M0S866_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P15250_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24153886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20570.12e-60GBF's pro-rich region-interacting factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y, et al.
    A highly efficient rice green tissue protoplast system for transient gene expression and studying light/chloroplast-related processes.
    Plant Methods, 2011. 7(1): p. 30
    [PMID:21961694]