PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P15130_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 210aa MW: 23262.8 Da PI: 9.9646 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 26.3 | 2.1e-08 | 1 | 77 | 1 | 69 |
GAGA_bind 1 mdddg..sre.rnkgyyepaaslkenlglqlmssiaerdaki.......rernlalsekkaavaerdmaflqrdkalae 69 mdddg + rn+gyye++ k nlgl+lmss+ erd+k+ +r+ +se+ + ++d +f d + e GSMUA_Achr2P15130_001 1 MDDDGdgGLDiRNWGYYEQT--WKGNLGLHLMSSVVERDTKPllsnggfLHRQCGVSEPLLPEPPKDDNFPVTDIPVGE 77 56654114569*******99..9******************96666666334444566555556677777666666555 PP | |||||||
2 | GAGA_bind | 248 | 6e-76 | 81 | 210 | 172 | 301 |
GAGA_bind 172 ekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259 + +k+++ ++++ ++ k++kks ++v+ng+sl++s++P+PvCsCtG+++ CY+WG+GGWqS CCtt+iS+yPLP+stkrrgaRiagrK GSMUA_Achr2P15130_001 81 PLKKRSKGRPQKFPKPKKSKKSAEMVINGISLNTSGIPTPVCSCTGKPQPCYRWGAGGWQSVCCTTSISMYPLPMSTKRRGARIAGRK 168 4556666677766999************************************************************************ PP GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 mSqgafkk+LekL++eG++l np+DL+++WAkHGtnkfvtir GSMUA_Achr2P15130_001 169 MSQGAFKKVLEKLTEEGHSLCNPIDLRSFWAKHGTNKFVTIR 210 *****************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 6.9E-102 | 1 | 210 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 4.6E-8 | 1 | 46 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 3.1E-72 | 83 | 210 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MDDDGDGGLD IRNWGYYEQT WKGNLGLHLM SSVVERDTKP LLSNGGFLHR QCGVSEPLLP 60 EPPKDDNFPV TDIPVGENET PLKKRSKGRP QKFPKPKKSK KSAEMVINGI SLNTSGIPTP 120 VCSCTGKPQP CYRWGAGGWQ SVCCTTSISM YPLPMSTKRR GARIAGRKMS QGAFKKVLEK 180 LTEEGHSLCN PIDLRSFWAK HGTNKFVTIR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018677856.1 | 1e-122 | PREDICTED: protein Barley B recombinant | ||||
Refseq | XP_018677857.1 | 1e-122 | PREDICTED: protein Barley B recombinant | ||||
Swissprot | Q9SKD0 | 7e-68 | BPC1_ARATH; Protein BASIC PENTACYSTEINE1 | ||||
TrEMBL | M0S854 | 1e-154 | M0S854_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P15130_001 | 1e-155 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2211 | 36 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68120.1 | 2e-59 | basic pentacysteine 3 |