PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P13400_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 241aa MW: 26457 Da PI: 8.6827 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 79.1 | 7.6e-25 | 8 | 65 | 1 | 58 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredam 58 +CaaCk+lrrkC++ Cv+apyfp +qp kfa vh++FGasnv kll++l++++reda GSMUA_Achr2P13400_001 8 PCAACKLLRRKCTPACVFAPYFPPDQPTKFASVHRVFGASNVAKLLNELSPSQREDAH 65 7*****************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 16.823 | 7 | 113 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-24 | 8 | 65 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MSPSTSSPCA ACKLLRRKCT PACVFAPYFP PDQPTKFASV HRVFGASNVA KLLNELSPSQ 60 REDAHQLNQV QRDLYDAKKE LSTYLSAPIA DPQKPAHQLL HYRQRLQGAS PSAAPPTVTV 120 MTLGLATPEA SSHQQILMHE LQQQMAAVQQ IAETAVASTR EQEMLRSYEQ QQKEHARFSA 180 VSMEGGGRGY CPTAFEGLLC VQQQHTPKQQ VLPMGRSSGH HHERSGALAL DTCRLSFPGK 240 S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 3e-29 | 2 | 64 | 5 | 67 | LOB family transfactor Ramosa2.1 |
5ly0_B | 3e-29 | 2 | 64 | 5 | 67 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389756.1 | 1e-172 | PREDICTED: protein LATERAL ORGAN BOUNDARIES-like | ||||
TrEMBL | M0S7N1 | 1e-176 | M0S7N1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P13400_001 | 1e-177 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2267 | 38 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 1e-35 | ASYMMETRIC LEAVES 2-like 1 |