PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P10490_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 235aa    MW: 25550.9 Da    PI: 7.3778
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P10490_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19100150255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+++AeIrdp   + +  r++lg+f+ta eAa+a+++a+ +++g
  GSMUA_Achr2P10490_001 100 RYRGVRQRP-WGKFAAEIRDP---NrRGSRIWLGTFDTAVEAARAYDRAAFQMRG 150
                            7********.**********9...4334*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.3E-33100159IPR001471AP2/ERF domain
SMARTSM003801.8E-39100164IPR001471AP2/ERF domain
CDDcd000181.20E-30100159No hitNo description
SuperFamilySSF541712.55E-23100159IPR016177DNA-binding domain
PROSITE profilePS5103224.605100158IPR001471AP2/ERF domain
PfamPF008473.8E-14100150IPR001471AP2/ERF domain
PRINTSPR003675.7E-11101112IPR001471AP2/ERF domain
PRINTSPR003675.7E-11124140IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MASLIGRGNG NLTLDFIRHH LLADLPPTPP SAVLPPPLPI GSHHHHHDGY RFPEPAAPMI  60
SFGPAGPDRL SSLTVALSSQ LGFDRVEEER PLVARDDARR YRGVRQRPWG KFAAEIRDPN  120
RRGSRIWLGT FDTAVEAARA YDRAAFQMRG RKAILNFPNE VGSSRHLAPP PPAPQSPEAE  180
VVEAESVPSA FTLTPSSWSS MWDFVEADAA GLFDVSALTP LSPHPSLGIA ALLVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-27101164669ATERF1
3gcc_A4e-27101164669ATERF1
5wx9_A1e-261001601474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:10792818, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by ethephon (ethylene-releasing compound) in buds and in leaves. Also strongly induced by cycloheximide, mechanical stimuli. Wounding leads to a both local and systemic expression, independently of ethylene, and through a de-novo-protein-synthesis-independent regulation. Wound induction is reduced by methyl-jasmonate. Induction by purified xylanase from Trichoderma viride (TvX) and another elicitor from Phytophthora infestans (PiE), that appears to be mediated by a protein kinase cascade, and to be negatively regulated by protein phosphatases. {ECO:0000269|PubMed:10652129, ECO:0000269|PubMed:12090623, ECO:0000269|PubMed:7756828, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389258.11e-163PREDICTED: ethylene-responsive transcription factor ERF105-like
SwissprotQ404786e-42ERF5_TOBAC; Ethylene-responsive transcription factor 5
TrEMBLM0S6U01e-166M0S6U0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P10490_0011e-167(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.19e-33ERF family protein