PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 292aa MW: 32463.4 Da PI: 5.9402

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P10040_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.8	1.8e-18	130	184	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++++q +Lee F+k+++++ +++ LA++l+L rqV vWFqNrRa+ k GSMUA_Achr2P10040_001 130 RKKLRLSTDQSAVLEESFKKHSTLNPKQKLALAEQLNLRPRQVEVWFQNRRARTK 184 788899***********************************************98 PP
2	HD-ZIP_I/II	126	1.7e-40	130	219	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 +kk+rls++q+++LEesF+++++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+kev+eLr GSMUA_Achr2P10040_001 130 RKKLRLSTDQSAVLEESFKKHSTLNPKQKLALAEQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCESLTEENRRLQKEVQELR 217 69*************************************************************************************9 PP HD-ZIP_I/II 89 eel 91 +l GSMUA_Achr2P10040_001 218 -AL 219 .55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04618	4.2E-19	2	102	IPR006712	HD-ZIP protein, N-terminal
PROSITE profile	PS50071	17.265	126	186	IPR001356	Homeobox domain
SMART	SM00389	1.8E-16	128	190	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.19E-18	128	194	IPR009057	Homeodomain-like
Pfam	PF00046	7.4E-16	130	184	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.2E-17	130	184	IPR009057	Homeodomain-like
CDD	cd00086	5.34E-16	130	187	No hit	No description
PROSITE pattern	PS00027	0	161	184	IPR017970	Homeobox, conserved site
Pfam	PF02183	5.6E-11	186	220	IPR003106	Leucine zipper, homeobox-associated
SMART	SM00340	1.1E-26	186	229	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009641	Biological Process	shade avoidance
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0009826	Biological Process	unidimensional cell growth
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MMMEKEDLAL SLGLNTSTNY FPPSLSLMAP SSSPSWPMSS HRLLGPSAGE TRPLLTMIDV 60 NRAPSVAATA GKVSEEEEEE EEGGASSLNS AVSSVGGKRA ERHALAGDDH DAERACFRVV 120 SDEEDGEGSR KKLRLSTDQS AVLEESFKKH STLNPKQKLA LAEQLNLRPR QVEVWFQNRR 180 ARTKLKQTEV DCEFLKKCCE SLTEENRRLQ KEVQELRALK LSPQLYMQMT PPTTLTMCPS 240 CERVSNPATT SSPANPQPSE HHQYSNHDRQ TAASWAPFPL EPLFLDSIPQ RS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	134	SRKKLRL
2	178	186	RRARTKLKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that plays a role in auxin-mediated morphogenesis. Negatively regulates lateral root elongation. {ECO:0000269\|PubMed:12492842}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00550	DAP	Transfer from AT5G47370	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By indole-3-acetic acid (IAA). {ECO:0000269\|PubMed:12492842}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389298.1	0.0	PREDICTED: homeobox-leucine zipper protein HAT4-like
Swissprot	P46601	1e-86	HAT2_ARATH; Homeobox-leucine zipper protein HAT2
TrEMBL	M0S6P5	0.0	M0S6P5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P10040_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2587	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16780.1	3e-84	homeobox protein 2

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zou LJ, et al. Role of Transcription Factor HAT1 in Modulating Arabidopsis thaliana Response to Cucumber mosaic virus. Plant Cell Physiol., 2016. 57(9): p. 1879-89 [PMID:27328697]