PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P08460_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 315aa MW: 35063.8 Da PI: 9.3883

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P08460_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18	7.9e-06	52	74	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H GSMUA_Achr2P08460_001 52 FVCEICNKGFQRDQNLQLHRRGH 74 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.5E-6	51	74	No hit	No description
Gene3D	G3DSA:3.30.160.60	9.3E-6	51	74	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	52	74	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	4.5E-5	52	74	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	52	74	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	54	74	IPR007087	Zinc finger, C2H2
SMART	SM00355	130	93	123	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	1.5E-6	123	148	No hit	No description
SMART	SM00355	150	128	148	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 315 aa Download sequence Send to blast
MKVEENMSNP TTSASSQNPV PAKRKRGLPG NPDPDAEVIA LSPNTLMATN RFVCEICNKG 60 FQRDQNLQLH RRGHNLPWKL KQRTNKQVRK KVYICPDASC VHHDPSRALG DLSGIKKHFS 120 RKHGEKKWKC EKCSKKYAVH SDWRAHCKIC GTREYRCDCG TLFSRRDSFI THRAFCDALA 180 EESARVTQAN PVADHHQHFQ MDPLSSIYAT MLESEFQREG QSSLPASYRT STTFPFLSAT 240 ALFQKEAQMG AVTARPRHID QMAAHTSSAT GFSLGWCSGG APLHGVKTHS ALLHEMACPP 300 PPPADIAGFS EGKPQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-34	124	187	3	66	Zinc finger protein JACKDAW
5b3h_F	1e-34	124	187	3	66	Zinc finger protein JACKDAW
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	90	KLKQRTNKQVRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009389465.2	0.0	PREDICTED: protein indeterminate-domain 2-like isoform X1
Refseq	XP_009389466.1	0.0	PREDICTED: protein indeterminate-domain 2-like isoform X2
Refseq	XP_009389469.1	0.0	PREDICTED: protein indeterminate-domain 2-like isoform X2
Swissprot	Q9SCQ6	1e-110	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	M0S687	0.0	M0S687_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P08460_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-101	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]