PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P08150_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 331aa    MW: 36095.2 Da    PI: 8.5471
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P08150_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2201.8e-06108130223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +CpdCg++F r+++L+ H+   H
  GSMUA_Achr2P08150_001 108 PCPDCGEVFMRSETLELHQAIsH 130
                            7******************9877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-4106126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280107130IPR007087Zinc finger, C2H2
PROSITE profilePS501579.245107135IPR007087Zinc finger, C2H2
SuperFamilySSF563994.03E-21132330No hitNo description
Gene3DG3DSA:3.90.228.101.2E-11134329IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MRNSPSVVKP EITTPESSKR LAATSSLNTP GRSFRSPSKD ISGAISTSFS SHSSASITAS  60
VTSSSSSLGG SFKGMHLRKL SGCYECHVMA DPTNGPSRDA SMRATICPCP DCGEVFMRSE  120
TLELHQAISH AVSELGAEDT SRNIIEIIFQ SSWLKNQTPV CKIDRILKVH NTQKAITRFE  180
DYRDSIKMKA NKLGKKHPRC VADGNELLRF YSTTCACSLG LHRSTSLCQS IKHCNVCSII  240
RDGFKVDELG KIRTMATSGM AHDMAHASSD DENRAMLVCR VIAGRVKKSQ EAAEEFDSVT  300
GVAGAYSNMD ELFVFSPKAI LPCFVVIYRS F
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389508.10.0PREDICTED: uncharacterized protein LOC103976050
TrEMBLM0S6560.0M0S656_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P08150_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.12e-94C2H2-like zinc finger protein