PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P06090_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 478aa    MW: 51460.2 Da    PI: 6.5193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P06090_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.13.2e-08329376455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    +k   Ka  L + + Y++sLq
  GSMUA_Achr2P06090_001 329 SHSLAERVRREKISERMKLLQDLVPGC----NKITGKALKLDQIIGYVQSLQ 376
                            8*************************9....899****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.24E-9323380No hitNo description
SuperFamilySSF474598.9E-16323396IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.335325375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-14325395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-5329376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-6331381IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEKERFFGVN WQSPDATTPP EMNSGGAADD RLPPTFLNLG WAQLMHHNVQ SGSSLGSLVS  60
SLSSNPPTVN DSVVIHELFG QLGSVCDAGE FPPTSLYHSA NVSCYSAPLS SPRKLNLFVT  120
DHQQQGRGGV MPSNQMAAAQ FAPSNSDPAK SYDLLRGQFG FPEAGKLSRV SSSQSLKAAD  180
GSQMGVPDDG KRVPVTDPES LEMELRSKFG GRASGASTPD EMGLGNGQDA SSALDTKINA  240
RKRKSKGKEA SFSSSIMNHP MSTEEDNSDA KRCRPAETNG AGKDAAAKPK TEQNGDAGHE  300
QGKENNAKLA EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKLLQD LVPGCNKITG  360
KALKLDQIIG YVQSLQRQVE FLSTKLATLN PQLDFLPKDQ IYPLDMTSTA FSYAQQPLQS  420
VATINPTSSS LHRPPLDGFA DATSQLGNLW EDDLQYAVRM GFAQSQGTAA FSQSSLAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009386001.10.0PREDICTED: transcription factor bHLH62
TrEMBLM0S5K00.0M0S5K0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P06090_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.14e-58bHLH family protein