PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P05790_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Nin-like
Protein Properties Length: 827aa    MW: 91215.6 Da    PI: 6.5653
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P05790_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.11.8e-28534585152
                 RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            aek+i+l+ l++yFs+++kdAA+++gvc+T+LK+iCRq+GI+RWP+Rki+++
  GSMUA_Achr2P05790_001 534 AEKNINLSLLQRYFSGSLKDAARSIGVCPTTLKKICRQHGISRWPSRKINKV 585
                            589***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.244519605IPR003035RWP-RK domain
PfamPF020421.3E-24537585IPR003035RWP-RK domain
SuperFamilySSF542777.85E-20723814No hitNo description
Gene3DG3DSA:3.10.20.2402.6E-19728809No hitNo description
SMARTSM006661.3E-14730812IPR000270PB1 domain
PROSITE profilePS5174520.59730812IPR000270PB1 domain
PfamPF005642.0E-14731809IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 827 aa     Download sequence    Send to blast
MDGLPPTGNG GNASQIKDDL SALSELMDFD GFTEAWSPTI ADQIFSILNF SDAQQTPATW  60
ASFMSPSSIA AQGTKAVPGD TNDDRKENMA SQKADLSLGL RNSYCRSYLA SDDISSEVIS  120
TVSRPFGGVS LTERMLKALL LFKESSCSGI LAQVWMPTVQ GDQYVLSTSD QPFLLDKNLA  180
GYREVSRNFI FYLKEAPGMF TGLPGLAKPN FNTEMENICN ALQVRNHGSY SYNFSYLKAT  240
ISVAFAGCGF DDHQNPDSST GSDKFCHNYN LTKSQMSAFS EILDVLRAVC HGHMLPLALT  300
WVPLWYDDGL NDSRKYDIGD MKSTSGRHIL CIQESACYVN DTQMQGFLHA CAEHHLEKGQ  360
GIAGKALQSN HPFFFPDVKV YDICEYPLAH HARKFSLRAA VAIRLRSIYT RNDDYVLEFF  420
LPINCIGSEE QQLLLNNLSN TLQRICRSLR TVSNAEIAGA EISRAGIHKE TDLGSSSTDF  480
SMKHSQLMDS DNETTSEMPL ESRNIGSHEQ SGDANHDQLN SGSMKHVEKK HTAAEKNINL  540
SLLQRYFSGS LKDAARSIGV CPTTLKKICR QHGISRWPSR KINKVHRSLQ KIQNVINSVH  600
GVEGALKYDP STGCIVTAVS SPEKSTLVTL DPKGQLKCET DELGVISNDC GREFNFISAD  660
GCLFPYANAQ SMHKLPFHEC QNVSTRSSLA APDKLTSPLS SSMTDSSSGS ASSHSSFKKS  720
QRLLSQTGPC VTVKATYNGD TVRFKFFPSL GSHHLFEEIG KRLKLLVGTF RLKYRDDEDD  780
WVILANDSDL EECIDALQNI VSRSIKLQVY DVPCNIGSSS SSNYLKT
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385750.10.0PREDICTED: protein NLP2-like
SwissprotQ0JC271e-173NLP2_ORYSJ; Protein NLP2
TrEMBLM0S5H00.0M0S5H0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P05790_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36703573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59580.21e-124Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]