PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr2P05300_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 428aa    MW: 46733.6 Da    PI: 7.9246
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr2P05300_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.25e-125075126
                           --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                           +++++C+f++rtG C+yG++Ck++H+
  GSMUA_Achr2P05300_001 50 PGEPNCSFYLRTGLCSYGSKCKYNHP 75
                           5789*********************8 PP
2zf-CCCH37.34.7e-1293118227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            +++ C+ff++tGtCk+G++Ck+ H++
  GSMUA_Achr2P05300_001  93 GQPDCQFFLKTGTCKFGATCKYYHPQ 118
                            6899********************97 PP
3zf-CCCH38.71.6e-12139163327
                            S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                            ++ C+++++tG+Ck+G  CkF+H++
  GSMUA_Achr2P05300_001 139 EKSCPYYMKTGYCKFGVACKFNHPQ 163
                            567********************97 PP
4zf-CCCH38.91.4e-12278303227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            ++++C+++++tG CkyG++Ck++H++
  GSMUA_Achr2P05300_001 278 DQPECQYYMKTGGCKYGSSCKYHHPK 303
                            689*********************96 PP
5zf-CCCH352.3e-11322347126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            ++++ C f+a++G CkyG++CkF H+
  GSMUA_Achr2P05300_001 322 PGEPACTFYAAYGSCKYGASCKFDHP 347
                            57899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.0E-54976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.1264977IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-95175IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-55475IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-45574IPR000571Zinc finger, CCCH-type
SMARTSM003566.4E-791118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.87391119IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-993118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-696121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-497118IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4136163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.643136164IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-10138163IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.79E-6139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-5141162IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5276303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.807276304IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-10278303IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6278305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-6282304IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6321348IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-5321347IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483321349IPR000571Zinc finger, CCCH-type
PfamPF006421.6E-8323347IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MPGARHNALS DSSSNASPGK LEVTMSRLNI EDEDGREGAD GQPNPYPDRP GEPNCSFYLR  60
TGLCSYGSKC KYNHPNITAK ETRCRDELPP RDGQPDCQFF LKTGTCKFGA TCKYYHPQDK  120
HDAQLFQLND LGLPIRKGEK SCPYYMKTGY CKFGVACKFN HPQPVSIGTM FPISGSLVYG  180
YTGSSAPIRG PSLIGLPLWP TLKTPYMTNP SMQGFPSCMP LIFPSTQATA PVQQGWTKYT  240
GSASIPSNKS LGSDHIPNSK HHADPGSSMA VIFPERPDQP ECQYYMKTGG CKYGSSCKYH  300
HPKERNQVAA CTIGPFGLPL RPGEPACTFY AAYGSCKYGA SCKFDHPYVV VFPLPDSSVM  360
PPHQRVAKST WMAADSSSCS FPIAPDEFKS VRIGEMQGVD NNEHGSPCTQ TSPTHTTPHS  420
ESSINQSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009385235.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like
TrEMBLM0S5C10.0M0S5C1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr2P05300_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115338132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.12e-89zinc finger protein 1