PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P05140_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 27384.4 Da PI: 5.8372 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.4 | 0.00023 | 89 | 111 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C++ F ++ L H++ H GSMUA_Achr2P05140_001 89 FSCNYCKRKFYSSQALGGHQNAH 111 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.8E-6 | 86 | 116 | No hit | No description |
PROSITE profile | PS50157 | 11.261 | 89 | 116 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 91 | 111 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MEEEEEEEEE EQRRREEKRE EEGDSTQQLI RKDESKTNFL LDLGLSANDG SSSSSPLLEL 60 NLIGSLGWSN SEPPPPEEAA SPESEPRVFS CNYCKRKFYS SQALGGHQNA HKRERNLAKR 120 GGLGLGDHAA VGYRLSESMG NLPLHGSYAG GPLGMQVHSM IHKPYIGTAA GLMYGRHGWL 180 RSPIANSQPA IGRLLTEEFY GGGRAQPAAK FEEAIAAAAA VGGKHWVGGG GGGGNHLNPR 240 QEELPKLDLS LKL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 221 | 229 | GGKHWVGGG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009386961.2 | 0.0 | PREDICTED: zinc finger protein 1-like | ||||
Refseq | XP_018677692.1 | 0.0 | PREDICTED: zinc finger protein 1-like | ||||
TrEMBL | M0S5A5 | 0.0 | M0S5A5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P05140_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10970.1 | 3e-30 | C2H2 family protein |