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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr2P04720_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | B3 | ||||||||
Protein Properties | Length: 241aa MW: 26714.9 Da PI: 4.9578 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 53.5 | 4.3e-17 | 129 | 220 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f ++++s v + +l +pkkf + ++ + ltl + + + We+++ ++ ++r + +GWk+Fv++n+Lk gD + F+l++++ GSMUA_Achr2P04720_001 129 FSIIMSKSQVQRPYQLAIPKKFWPHLP---NTCVPLTL-HFKKKIWEMRYYGDRAQRR--FDGGWKHFVNDNNLKIGDCCFFELMDET 210 5567899999************94443...23455663.4688*******33555555..9************************99* PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +f+++v+++r GSMUA_Achr2P04720_001 211 DFTFRVQLLR 220 ******9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-19 | 125 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.92E-19 | 125 | 218 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.88E-19 | 127 | 220 | No hit | No description |
PROSITE profile | PS50863 | 12.647 | 129 | 222 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.0E-10 | 129 | 222 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.1E-15 | 129 | 221 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 241 aa Download sequence Send to blast |
MCRGYLNFYK DCGSAGFEGC EVTAAGQYIW NPARWPGNGA GLLIEEVVVE SCSAISASGG 60 PMSDSSVVLA ACSLTSEESN NHPAGHHVSN CSTNGENNHE DDVSSPNPSE PDISDAEEKT 120 VPLSGKPFFS IIMSKSQVQR PYQLAIPKKF WPHLPNTCVP LTLHFKKKIW EMRYYGDRAQ 180 RRFDGGWKHF VNDNNLKIGD CCFFELMDET DFTFRVQLLR GDLPAECLNN GLSSDRPILI 240 D |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009386873.1 | 0.0 | PREDICTED: B3 domain-containing protein Os04g0386900-like | ||||
TrEMBL | M0S563 | 0.0 | M0S563_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr2P04720_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8954 | 35 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18000.1 | 2e-10 | VERDANDI |