PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P01920_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 290aa MW: 31456.7 Da PI: 10.9261

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P01920_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.8	1.6e-30	80	133	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl GSMUA_Achr2P01920_001 80 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 133 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.059	77	136	IPR017930	Myb domain
SuperFamily	SSF46689	2.69E-20	77	137	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.1E-30	79	138	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-24	81	133	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-7	83	132	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MPFVADPHHP QPRRRLQHTR RRRPRRPTEN PRTSPLPPTP RPPGPPSPTP PTPSDLEPSD 60 LNSDSAAAPG GDEPARTLKR PRLVWTPQLH KRFVDAVAHL GIKNAVPKTI MQLMSVDGLT 120 RENVASHLQK YRLYLKRMQG LATSGGGAGS GPISAADAAT DQLFASAPVP HHFLSRGPVA 180 GPEPFPPYVP MPALQHHQQI AAAMQQQQYY HQRHLGHFGS PTGGRGFDQG FLNRAVPQSG 240 MHQMLAPAPG MGLMQLSSPR AASFVDDSEP AGREGSGERK VLTLFPTGED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	3e-31	80	136	1	57	Transcription factor LUX
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	26	RRLQHTRRRRPRRP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT060585	2e-74	BT060585.2 Zea mays full-length cDNA clone ZM_BFb0019C20 mRNA, complete cds.
GenBank	BT086588	2e-74	BT086588.1 Zea mays full-length cDNA clone ZM_BFc0188H07 mRNA, complete cds.
GenBank	JX469987	2e-74	JX469987.1 Zea mays subsp. mays clone UT3347 G2-like transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018685313.1	1e-115	PREDICTED: transcription factor PCL1-like isoform X2
Swissprot	O22210	3e-48	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	M0S4D3	0.0	M0S4D3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P01920_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1620	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	1e-52	G2-like family protein

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]