PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr2P01180_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 397aa MW: 44156.3 Da PI: 6.8718

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr2P01180_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.7	5.6e-33	47	101	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wt eLHerF+eav+qLGG++kAtPk++++lm+++gLtl+h+kSHLQkYRl GSMUA_Achr2P01180_001 47 KPRLKWTAELHERFIEAVNQLGGADKATPKSVMRLMGIPGLTLYHLKSHLQKYRL 101 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.204	44	104	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-31	45	102	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.3E-17	46	102	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-23	47	102	IPR006447	Myb domain, plants
Pfam	PF00249	5.6E-10	49	100	IPR001005	SANT/Myb domain
Pfam	PF14379	8.6E-25	147	193	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MYHHQHHHQG HNNILSCRTA FPAEKHLLLQ GGSIPEDSGL VLSTDAKPRL KWTAELHERF 60 IEAVNQLGGA DKATPKSVMR LMGIPGLTLY HLKSHLQKYR LSKNLQAQAN GAESVIGCKL 120 AAERTSEGNG SRASNTNIIP QSNKTYPINE ALQMQIEVQR RLQEQLEVQR HLQLRIEAQG 180 KYLQSVLEKA QETLGKQHLG TPGLEAAKVH LSQLVFKVSN ECFSNALTGL EEIPAPNTLQ 240 VHPPQLADFS VQSCLTSSQG SQKDLDMANF RRSLRAYMHE NARLEGSQSA WCYLNEHKTF 300 PSSMFGDSER TSFKVEDFVS PLPVRPRVER EGEAGSDAQQ TERSDPNGKR TAEQQERGKQ 360 SDSFGLAGHT AQLDLNADED DEGATNSKFD LNGFSWS

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MYHHQHHHQG HNNILSCRTA FPAEKHLLLQ GGSIPEDSGL VLSTDAKPRL KWTAELHERF  60
IEAVNQLGGA DKATPKSVMR LMGIPGLTLY HLKSHLQKYR LSKNLQAQAN GAESVIGCKL  120
AAERTSEGNG SRASNTNIIP QSNKTYPINE ALQMQIEVQR RLQEQLEVQR HLQLRIEAQG  180
KYLQSVLEKA QETLGKQHLG TPGLEAAKVH LSQLVFKVSN ECFSNALTGL EEIPAPNTLQ  240
VHPPQLADFS VQSCLTSSQG SQKDLDMANF RRSLRAYMHE NARLEGSQSA WCYLNEHKTF  300
PSSMFGDSER TSFKVEDFVS PLPVRPRVER EGEAGSDAQQ TERSDPNGKR TAEQQERGKQ  360
SDSFGLAGHT AQLDLNADED DEGATNSKFD LNGFSWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	8e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-20	47	103	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009380592.1	0.0	PREDICTED: myb-related protein 2-like isoform X1
Swissprot	Q9SQQ9	1e-111	PHL9_ARATH; Myb-related protein 2
TrEMBL	M0S459	0.0	M0S459_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr2P01180_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	4e-93	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]