PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P27380_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

VOZ

Protein Properties

Length: 282aa MW: 31079.4 Da PI: 4.648

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P27380_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	176.5	1.2e-54	173	282	1	112
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataks 88 pppsafl+pkcalwdc+rpaqgsew++dycssfh+tla+ne++pg+t vlrp+gidlkdg+lf alsak+qgk vgip+cega +s GSMUA_Achr1P27380_001 173 PPPSAFLRPKCALWDCPRPAQGSEWCRDYCSSFHTTLAINEDMPGMTLVLRPGGIDLKDGPLFTALSAKIQGKIVGIPVCEGA---RS 257 89******************************************************************************8...79 PP VOZ 89 pwnaael.fdlsllegetirewlff 112 pwna+ + +dl++le e++rewlff GSMUA_Achr1P27380_001 258 PWNASGMaIDLCVLEDESLREWLFF 282 98758*************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MGTGCKSALH HLHRDKARNR VDDLQSAIKD CRAADVAVLE EQVYQRLREC WAELNQPSPT 60 TSLQVIESEA DLSFCLFTLR LLQLSEEEDD ATSKLAELAF GNTPKPELVE LQQADVGAAQ 120 GGRAANFQEV NTNLIFFSLC SKLQTGPDNV TCHEGNGRNV FPYMSYVLPA ICPPPSAFLR 180 PKCALWDCPR PAQGSEWCRD YCSSFHTTLA INEDMPGMTL VLRPGGIDLK DGPLFTALSA 240 KIQGKIVGIP VCEGARSPWN ASGMAIDLCV LEDESLREWL FF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018683794.1	1e-122	PREDICTED: transcription factor VOZ1-like isoform X1
Refseq	XP_018683795.1	1e-123	PREDICTED: transcription factor VOZ1-like isoform X2
Swissprot	Q9SGQ0	9e-78	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	M0S3J5	0.0	M0S3J5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P27380_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2343	38	88

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	4e-80	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]