PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P27010_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 226aa MW: 25220.6 Da PI: 8.7309

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P27010_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.7	6.3e-11	60	108	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk + Ka +Le+ ++Y++sLq GSMUA_Achr1P27010_001 60 NSHSLAERIRREKISERMRLLQDLVPGC----SKINGKALMLEEIINYVQSLQ 108 58************************....899***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.79E-11	55	112	No hit	No description
SuperFamily	SSF47459	1.83E-16	55	125	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.085	57	107	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-15	57	123	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-8	60	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.9E-9	63	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MKSTNFYLFK AEEQHDVSFE SGKAATGKDG KEQKNEVKRG GNNHKNDCTH VRAKRGQATN 60 SHSLAERIRR EKISERMRLL QDLVPGCSKI NGKALMLEEI INYVQSLQRQ VEFLSMKLAT 120 VDPELNFDLD QTLSGDVHSC YGGSAVLAFG PGMSSFQPHL YESTSQRVTQ PEMFCTAPSP 180 GDLLQAFLSQ TNISQVRRSH FFAGLAWLSS YSPLIGLLTT VRRCMA

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269\|PubMed:23161888}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009419444.1	1e-136	PREDICTED: transcription factor bHLH49-like isoform X1
Refseq	XP_018678550.1	1e-136	PREDICTED: transcription factor bHLH49-like isoform X1
Refseq	XP_018678552.1	1e-136	PREDICTED: transcription factor bHLH49-like isoform X1
Refseq	XP_018678554.1	1e-136	PREDICTED: transcription factor bHLH49-like isoform X1
Refseq	XP_018678559.1	1e-136	PREDICTED: transcription factor bHLH49-like isoform X1
Refseq	XP_018678563.1	1e-136	PREDICTED: transcription factor bHLH49-like isoform X1
Swissprot	Q9CAA9	6e-46	BH049_ARATH; Transcription factor bHLH49
TrEMBL	M0S3F8	1e-169	M0S3F8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P27010_001	1e-170	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6033	36	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.2	2e-48	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Tian C, et al. An organ boundary-enriched gene regulatory network uncovers regulatory hierarchies underlying axillary meristem initiation. Mol. Syst. Biol., 2014. 10: p. 755 [PMID:25358340] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]