PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P26740_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 529aa    MW: 56975.2 Da    PI: 4.9968
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P26740_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS305.21.5e-931104931374
                   GRAS   1 lvelLlecAeavss..gdlelaqalLarlselaspdgd.......pmqRlaayfteALaarlarsvselykalppsetsekn..ssee 77 
                            lv+lL+++Aea++   ++ ela+ +L rl+el+ ++g        +++Rl+a+ft AL+  l +s+s  +   ++ ++ +    +s++
  GSMUA_Achr1P26740_001 110 LVHLLVAAAEALAGphKSPELARVILVRLKELVLQAGAgagvggtSIERLTAHFTDALQGLLDGSTSAHCGGRNSFRDGHLLhhTSDV 197
                            689*********98446667************6666544566666*******************7766665554444433224699** PP

                   GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetge 163
                            l+a++l++++sP++kf+h+taNqaIle++ ge+r+HiiD+di +G+QW++LlqaL sRp  ++pp+lRiT+v +   g +++++etg+
  GSMUA_Achr1P26740_001 198 LTAFQLLQDMSPYIKFGHFTANQAILEETLGERRIHIIDYDIAEGVQWASLLQALVSRPggSPPPHLRITAVTR---GGSRAMRETGR 282
                            ***********************************************************777789*********...899******** PP

                   GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..n 249
                             La fA+++g pf+f+    ++ e++++   +v +gE+l+ n+vl+      +s+s +s   ++L+   +l +kvv++ve+e +   +
  GSMUA_Achr1P26740_001 283 LLAAFAASVGQPFSFSQCRLDADEQFRPAGVKVVKGETLVMNCVLHPTMNNTRSGSASS-VASFLRGAVELGAKVVTLVEEEEQEqsE 369
                            *****************99999***********************88777777777777.9*******************99665346 PP

                   GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337
                            + sF++rf+  l+ ysa+ dslea++p + ++r +vEr++l+++i  +v  + ++  +++et ++W +++  +GF+ v++s ++ +qa
  GSMUA_Achr1P26740_001 370 ERSFVRRFMGELHRYSAVWDSLEAGFPMQGKARGMVERVILAPRIAGAVGRAYRD-SKEEETDGRWGKWMAVMGFGRVRISCFNHCQA 456
                            779***************************************************9.677788************************** PP

                   GRAS 338 klllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                            klll  ++ dgy+vee+ s+ l lgWk+r+L+s+S+W+
  GSMUA_Achr1P26740_001 457 KLLLGLFN-DGYSVEEDgSNKLALGWKSRRLLSASVWK 493
                            ********.******99789999**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.68284473IPR005202Transcription factor GRAS
PfamPF035145.2E-91110493IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MEVAMEEAVA PSGCSSTTTT MDDDFICAWN DWNPAVDWGS FSSVADDFHE LIESMMCPDV  60
VDSPDGLMSV SQTPSYNSSP SSMATSADTP AEEDVGAGGS HDGDEKGLRL VHLLVAAAEA  120
LAGPHKSPEL ARVILVRLKE LVLQAGAGAG VGGTSIERLT AHFTDALQGL LDGSTSAHCG  180
GRNSFRDGHL LHHTSDVLTA FQLLQDMSPY IKFGHFTANQ AILEETLGER RIHIIDYDIA  240
EGVQWASLLQ ALVSRPGGSP PPHLRITAVT RGGSRAMRET GRLLAAFAAS VGQPFSFSQC  300
RLDADEQFRP AGVKVVKGET LVMNCVLHPT MNNTRSGSAS SVASFLRGAV ELGAKVVTLV  360
EEEEQEQSEE RSFVRRFMGE LHRYSAVWDS LEAGFPMQGK ARGMVERVIL APRIAGAVGR  420
AYRDSKEEET DGRWGKWMAV MGFGRVRISC FNHCQAKLLL GLFNDGYSVE EDGSNKLALG  480
WKSRRLLSAS VWKPPLSPPP PCPPSPIRVG IVTPDGLTAS FEDSDFVSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4713949439380Protein SCARECROW
5b3h_A1e-4713949438379Protein SCARECROW
5b3h_D1e-4713949438379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009419162.10.0PREDICTED: nodulation-signaling pathway 2 protein
SwissprotQ5NE241e-157NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLM0S3D10.0M0S3D1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P26740_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP75803148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-103GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]