PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P26180_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C3H

Protein Properties

Length: 463aa MW: 52570.2 Da PI: 6.5892

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P26180_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.6	8.9e-08	7	31	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ykt+lC f+r G C++ +C+FaHg+ GSMUA_Achr1P26180_001 7 YKTKLCILFQR-GRCPR-QNCNFAHGE 31 9********.*.*****96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	9.61E-6	4	35	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-11	5	35	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.995	6	32	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.9E-4	6	31	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-5	7	31	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 463 aa Download sequence Send to blast
MIGRKLYKTK LCILFQRGRC PRQNCNFAHG EAELRRFGGS FHGRRDHRSG DLRDKLDRRH 60 SPHRRLSPDR DARGYHTFRY QKPISRDRGY SLSRSPVRRS ERRHRKKQHT DGESDVSDSF 120 KGSDGPEDRK KEDKTSSYDE KDGLEEQLKQ LQLDIEMLDD HKSQLVIFLE EKVDEAHKLS 180 SRIADLESQL SKEQEDCRRT TSKIKKFIKA HGRYMKAQEE SQTRLQKIGD QLGSDTLKSN 240 ANEDDPSINV VSDGEPNDDG KTSPRNDDIL SNALSNKKRS LGYLAASEEV KIGISRKRER 300 DSEVVYKSEK LPRSEGPVPL SEMISKGTET MKTILTRNKS LVEDYKHKQG RSASSSIASL 360 DKGKGSEVKH SLPSTGMAAN AADEFIEAVE IDDKPEAIDA TTVFDYGDVD YGTKSSYIPP 420 APPPVTQNTY KQYEGDDEEV DVEKVDSEML DIDLNSEVEI EQV

Sequence ? help Back to Top

Protein Sequence Length: 463 aa Download sequence Send to blast

MIGRKLYKTK LCILFQRGRC PRQNCNFAHG EAELRRFGGS FHGRRDHRSG DLRDKLDRRH  60
SPHRRLSPDR DARGYHTFRY QKPISRDRGY SLSRSPVRRS ERRHRKKQHT DGESDVSDSF  120
KGSDGPEDRK KEDKTSSYDE KDGLEEQLKQ LQLDIEMLDD HKSQLVIFLE EKVDEAHKLS  180
SRIADLESQL SKEQEDCRRT TSKIKKFIKA HGRYMKAQEE SQTRLQKIGD QLGSDTLKSN  240
ANEDDPSINV VSDGEPNDDG KTSPRNDDIL SNALSNKKRS LGYLAASEEV KIGISRKRER  300
DSEVVYKSEK LPRSEGPVPL SEMISKGTET MKTILTRNKS LVEDYKHKQG RSASSSIASL  360
DKGKGSEVKH SLPSTGMAAN AADEFIEAVE IDDKPEAIDA TTVFDYGDVD YGTKSSYIPP  420
APPPVTQNTY KQYEGDDEEV DVEKVDSEML DIDLNSEVEI EQV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX613531	1e-174	JX613531.1 Gossypium hirsutum clone NBRI_GE56493 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009418413.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 13
Swissprot	Q6H7U2	1e-118	C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13
TrEMBL	M0S375	0.0	M0S375_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P26180_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3882	29	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21810.1	7e-48	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]