PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P24490_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family YABBY
Protein Properties Length: 198aa    MW: 22397.8 Da    PI: 9.4605
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P24490_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY133.52.7e-4151534162
                  YABBY   4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 
                            +s +e++Cyv+C++Cnt+l v vPs+ ++ +vtvrCGhC +l    l  + +++a + h     ++  + +l++ ++ ++    +   
  GSMUA_Achr1P24490_001   5 VSPTEHICYVRCSYCNTVLKVGVPSKRMIDTVTVRCGHCDHLSF--LCPSDHQMALQVHK----QNYHAVNLETCTDYIRGIPLSLPP 86 
                            5789***********************************98755..55555555555541....111222333333333333333333 PP

                  YABBY  92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                            +  s s    s+ +++ ++++p v +PPek+ r+Psaynrf++eeiqrika+ Pdi hreafs a+knWa 
  GSMUA_Achr1P24490_001  87 PPPSSS----SSLREQIIQKPPFVTKPPEKKHRMPSAYNRFMREEIQRIKAAKPDIPHREAFSKASKNWAR 153
                            222222....2334555666666**********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.1E-457154IPR006780YABBY protein
SuperFamilySSF470959.16E-8103156IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.101.8E-5108156IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDYSVSPTEH ICYVRCSYCN TVLKVGVPSK RMIDTVTVRC GHCDHLSFLC PSDHQMALQV  60
HKQNYHAVNL ETCTDYIRGI PLSLPPPPPS SSSSLREQII QKPPFVTKPP EKKHRMPSAY  120
NRFMREEIQR IKAAKPDIPH REAFSKASKN WARCDPRRST SVSISGAKSK PASVPQIKES  180
SCPIVESSSI YKQMEQKE
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009415804.11e-117PREDICTED: protein DROOPING LEAF-like
SwissprotQ76EJ02e-62YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLM0S2Q61e-144M0S2Q6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P24490_0011e-144(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59513657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.14e-50YABBY family protein