PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 182aa MW: 20961.9 Da PI: 9.6853

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P22640_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.1	1.5e-18	29	82	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++++eq++ Le+ F +++++ e++ +LA++lgL+ +qV vWFqNrRa++k GSMUA_Achr1P22640_001 29 KKRRLSDEQVRFLETSFGEEKKLEFERKVHLAAELGLDPKQVAVWFQNRRARHK 82 45689***********************************************99 PP
2	HD-ZIP_I/II	118.3	4.3e-38	29	120	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 kkrrls+eqv++LE+sF ee+kLe erKv+la eLgl+p+qvavWFqnrRAR+k+kq+E+ y +Lk+ +da + e+++Le+ev +L++ GSMUA_Achr1P22640_001 29 KKRRLSDEQVRFLETSFGEEKKLEFERKVHLAAELGLDPKQVAVWFQNRRARHKSKQVEEAYLKLKSIHDATVVEKCHLETEVLKLKD 116 9*************************************************************************************** PP HD-ZIP_I/II 90 elke 93 +l+e GSMUA_Achr1P22640_001 117 KLHE 120 9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	16.584	24	84	IPR001356	Homeobox domain
SMART	SM00389	2.2E-17	27	88	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.78E-17	28	88	IPR009057	Homeodomain-like
CDD	cd00086	2.65E-15	29	85	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.6E-18	29	82	IPR009057	Homeodomain-like
Pfam	PF00046	6.2E-16	29	82	IPR001356	Homeobox domain
PRINTS	PR00031	8.1E-6	55	64	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	59	82	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.1E-6	64	80	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MLVLPMVGET RVRRRRKRTK GEGAEGDAKK RRLSDEQVRF LETSFGEEKK LEFERKVHLA 60 AELGLDPKQV AVWFQNRRAR HKSKQVEEAY LKLKSIHDAT VVEKCHLETE VLKLKDKLHE 120 AEEEIRKLSL VANGGVVGGN GESAFTVETT PITEQTLYFR GSPPFMFSSY HHENLPSREK 180 DF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	10	17	RVRRRRKR
2	13	31	RRRKRTKGEGAEGDAKKRR
3	15	31	RKRTKGEGAEGDAKKRR
4	76	84	RRARHKSKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00473	DAP	Transfer from AT4G36740	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009408021.1	4e-90	PREDICTED: homeobox-leucine zipper protein HOX12-like
Swissprot	Q7XI85	7e-45	HOX14_ORYSJ; Homeobox-leucine zipper protein HOX14
TrEMBL	M0S272	1e-130	M0S272_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P22640_001	1e-130	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2006	38	101

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	3e-43	homeobox protein 40

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]