PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P22100_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 219aa MW: 23518.5 Da PI: 9.1887

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P22100_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	99.9	1.8e-31	145	198	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt+ LH++Fv+a+e LGG+e+AtPk+ilelm vk+Ltl+hvkSHLQ+YR+ GSMUA_Achr1P22100_001 145 PRMRWTSSLHAHFVHAIELLGGHERATPKSILELMAVKDLTLAHVKSHLQMYRT 198 9****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	7.35E-16	141	199	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	4.5E-28	143	199	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-24	145	199	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-6	146	197	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MPLKGESTGT SSTASPDLSL TIGLPGVVSS GTSGDDGRYR ACIDLSLACA MSSSEANVFQ 60 RFQGPLSSPT PINGAPIYPK SGLQHQMSSS SCNGYPNEAY LMSSYLHWSN EYFPCGVGSL 120 EATQSLMRSR STPRYPTKRS TIRAPRMRWT SSLHAHFVHA IELLGGHERA TPKSILELMA 180 VKDLTLAHVK SHLQMYRTTK STDKPAASSG NPCSSSSTN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-17	146	200	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-17	146	200	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	4e-17	146	200	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-17	146	200	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-17	146	200	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-17	146	200	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-17	146	200	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-17	146	200	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-17	146	200	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-17	146	200	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-17	146	200	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-17	146	200	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009413774.2	1e-154	PREDICTED: transcription repressor KAN1-like isoform X2
Refseq	XP_018681942.1	1e-153	PREDICTED: probable transcription factor KAN3 isoform X1
TrEMBL	M0S218	1e-160	M0S218_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P22100_001	1e-160	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6554	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	4e-41	G2-like family protein