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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P20550_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Dof | ||||||||
Protein Properties | Length: 270aa MW: 29846.4 Da PI: 8.1439 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.2 | 1e-39 | 46 | 105 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++ kcprCdst+tkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGgg+rknk+ GSMUA_Achr1P20550_001 46 QQEQAKCPRCDSTHTKFCYYNNYSLSQPRYFCKACRRYWTKGGALRNVPVGGGCRKNKRP 105 57899****************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-25 | 40 | 99 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.6E-33 | 48 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.152 | 50 | 104 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 52 | 88 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 270 aa Download sequence Send to blast |
MQIFMESSDW LKSVVREDGG MDFSSTPGEL LSCSRLPVGD RRLRPQQEQA KCPRCDSTHT 60 KFCYYNNYSL SQPRYFCKAC RRYWTKGGAL RNVPVGGGCR KNKRPAAKKA AEPHRQPAFS 120 LPGATDLQSS FNGAQPQQFP SLTEIPGNLN FAECKYDSEL GSFSSGLHPM RTKYGAMQGS 180 SQSFVFVSEG DIGLGVATQG FPSDDNTREV FMDGSHAVLM QACQRIEDPF GQNRNTNTEF 240 LRLLGRNSGV QMVDVTQWGT PTASDHGPES |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009410577.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.7-like | ||||
TrEMBL | M0S1L3 | 0.0 | M0S1L3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P20550_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4704 | 32 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62940.1 | 3e-34 | Dof family protein |