PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P19750_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bZIP

Protein Properties

Length: 332aa MW: 37509.2 Da PI: 4.4412

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P19750_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.9	6.1e-10	162	202	5	45
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k+ rr ++NR +A +sR+RKk++++eLe k k Leae ++L GSMUA_Achr1P19750_001 162 KKRRRQMRNRDSAMKSRERKKMYVKELEMKNKYLEAECRRL 202 899*********************************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	0.0065	155	222	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	6.1E-10	156	220	No hit	No description
PROSITE profile	PS50217	9.714	160	202	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	2.13E-9	162	220	No hit	No description
Pfam	PF00170	1.3E-7	162	202	IPR004827	Basic-leucine zipper domain
CDD	cd14704	2.70E-13	163	213	No hit	No description
PROSITE pattern	PS00036	0	165	180	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MAGAVDSPKT PDEHLELDLD FDFDIDYLLK TFSDEGVGVL LDPSAGLCVD DCPPPSNVSE 60 EDKYDSPSGE PDGPSDSFSS YVSHLEKFLM EEEEGEAHVA AKEGFEADDF VACLFAEASR 120 DEGGEVATPD SEASKRKERE EEEDEEEPPV AADGEDDDPV NKKRRRQMRN RDSAMKSRER 180 KKMYVKELEM KNKYLEAECR RLDYVFRCCT AENLALHQRL QKERLYDAPT AKQESAVLFM 240 ESLLLGSLSW LVSIVCLFLV PVLPNLSPKD INPLERGLAD EVVSAKKVTN KRLETNLRSG 300 LVVFRKRCRG MRTRMKNLFV APAFYSDYLI VP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	162	181	KRRRQMRNRDSAMKSRERKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in endoplasmic reticulum (ER) stress response (PubMed:21223397, PubMed:22050533, PubMed:22199238). Acts downstream of the ER stress sensors IRE1, BZIP39 and BZIP60 to activate BiP chaperone genes (PubMed:22050533, PubMed:22199238). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533, ECO:0000269\|PubMed:22199238}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By dithiothreitol-induced endoplasmic reticulum (ER) stress response (PubMed:22050533, PubMed:21223397). Induced by salt stress (PubMed:22050533). {ECO:0000269\|PubMed:21223397, ECO:0000269\|PubMed:22050533}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX620515	0.0	JX620515.1 Gossypium hirsutum clone NBRI_GE66771 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009411586.1	0.0	PREDICTED: bZIP transcription factor 60
Swissprot	Q69XV0	3e-56	BZP50_ORYSJ; bZIP transcription factor 50
TrEMBL	M0S1D3	0.0	M0S1D3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P19750_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6934	37	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G42990.1	1e-10	basic region/leucine zipper motif 60

Publications ? help Back to Top
Wakasa Y, et al. Expression of ER quality control-related genes in response to changes in BiP1 levels in developing rice endosperm. Plant J., 2011. 65(5): p. 675-89 [PMID:21223397] Lu SJ, et al. Conservation of IRE1-regulated bZIP74 mRNA unconventional splicing in rice (Oryza sativa L.) involved in ER stress responses. Mol Plant, 2012. 5(2): p. 504-14 [PMID:22199238]