PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P19650_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 304aa    MW: 31769.8 Da    PI: 9.6838
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P19650_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH31.62.8e-10102127227
                            -S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                            kt+lC+ +     Ck+GdrC+FaHg+
  GSMUA_Achr1P19650_001 102 KTRLCNKYNTAEGCKFGDRCNFAHGE 127
                            8***********************96 PP
2zf-CCCH345e-11271296127
                            --S---SGGGGTS--TTTTT-SS-SSS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                            ykt+lC +f + G C++GdrC+FaHg+
  GSMUA_Achr1P19650_001 271 YKTKLCENFGK-GSCSFGDRCHFAHGE 296
                            9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.0423462IPR000571Zinc finger, CCCH-type
SMARTSM003564.83461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-53561IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.6E-73659IPR000571Zinc finger, CCCH-type
PfamPF146081.74259No hitNo description
Gene3DG3DSA:4.10.1000.101.3E-1498133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-899131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.164100128IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012100127IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-7102127IPR000571Zinc finger, CCCH-type
SMARTSM003228.5E-11176246IPR004087K Homology domain
PROSITE profilePS5008414.466177241IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.105.5E-15177245IPR004088K Homology domain, type 1
SuperFamilySSF547915.01E-14178267IPR004088K Homology domain, type 1
CDDcd001051.42E-13179241No hitNo description
PfamPF000131.2E-10179243IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.7E-16269301IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-9269300IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-7270296IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.868270297IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8271296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEASRKRGPP DAANGSGPAS KRTRESDSFQ HGIGSKSKPC TKFFSTAGCP FGEGCHFLHY  60
VPGGLQAVAQ MNNLGNPALA PPVRNPAALS AIHDGAPAPA VKTRLCNKYN TAEGCKFGDR  120
CNFAHGEQEL GKPKVSSTDG PMAPPMGGRP GGRYEPVRRY EPVPPSTVGA AASFGVSATA  180
KISVDASLSG AIIGKGGVNT KQICRLTGAK LSIREHESDP NLKNIELEGS FDQINRASAM  240
VRELIVNISA TTGLPARNSA PAATTGSRSN YKTKLCENFG KGSCSFGDRC HFAHGESELR  300
RASG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009411776.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-133C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLM0S1C30.0M0S1C3_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P19650_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-55C3H family protein