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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P18840_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | GRAS | ||||||||
Protein Properties | Length: 614aa MW: 67549.1 Da PI: 5.6901 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 382.9 | 3.9e-117 | 234 | 599 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsev 87 lv+lL++c e +ss++ e+ + +Larl e+a+p g+p++R++ayfteALa r a+ +++++ pp++ ++ + ++ + al l+ v GSMUA_Achr1P18840_001 234 LVSLLTSCTESMSSSNYEAMSFFLARLGEMATPFGTPLHRVVAYFTEALALRAAKLLPHIFSVAPPKTITDPTdNDDDAIALLLLDCV 321 6899***********************************************************988876654449999999999**** PP GRAS 88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvp 175 sPi+kf h+t N+ +l+a+eg++rvHiiDfd++qGlQWpaL+q+LasRp++p ++RiTg+g+ l++ g rLa +Ae+l++p GSMUA_Achr1P18840_001 322 SPIPKFLHFTLNERLLKAFEGKDRVHIIDFDVKQGLQWPALFQSLASRPNPPGHVRITGIGE----CGPHLQQAGVRLAGIAESLDLP 405 **************************************************************....********************** PP GRAS 176 fefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealey 263 fef++ v++rled++l++L+vk++E++aVn++l +h++l ++ + +++L l++s++P++vv++eqea+hn++++ +r++ +l+y GSMUA_Achr1P18840_001 406 FEFHP-VVDRLEDIRLWMLHVKREECVAVNCALTMHKTLYDESGKA--LTDLLGLIRSTRPEIVVMAEQEAKHNEPTWETRLAGSLNY 490 *****.7******************************995554443..489************************************* PP GRAS 264 ysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351 y+++fds+e lp +s++rik+E++ +++ei+n+va eg+er+erhe++ +Wr+ +++ GF+ + ++e +q +++ r+++ + y++ GSMUA_Achr1P18840_001 491 YASVFDSMEHALPVDSQARIKIEEA-FAKEIRNIVAREGSERTERHESFDRWRKLMQDGGFRCLGIGEG--EQSRMIPRMYSCENYSI 575 *************************.****************************************986..68999999999888*** PP GRAS 352 eee..sgslvlgWkdrpLvsvSaW 373 +e+ + l+l W ++pL++vSaW GSMUA_Achr1P18840_001 576 HEQgeGDGLTLKWLHQPLYTVSAW 599 9875477899************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 52.088 | 208 | 580 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-114 | 234 | 599 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 614 aa Download sequence Send to blast |
MLAGCPLTLP SPGIDASVQL QPYHFQLQEK KHCPPQQTMG TQRLDLPCGF SSRKDPLRAV 60 LSGETPSAEA PGTSCSFRQH PVTHSSSSSL VAQAAAPWGR TVEAIDGRNG GPWEQRRSSK 120 RLHDRISCGD YRAKRTRTVD VEADAWPSPS TEEPPLVEAE EERVFLVPNA ASFPLPAFSG 180 HDRSRSETSS SSGAFICSGN TATSDGPRLP PASGFAGFGG EGEGIQTEQQ GLELVSLLTS 240 CTESMSSSNY EAMSFFLARL GEMATPFGTP LHRVVAYFTE ALALRAAKLL PHIFSVAPPK 300 TITDPTDNDD DAIALLLLDC VSPIPKFLHF TLNERLLKAF EGKDRVHIID FDVKQGLQWP 360 ALFQSLASRP NPPGHVRITG IGECGPHLQQ AGVRLAGIAE SLDLPFEFHP VVDRLEDIRL 420 WMLHVKREEC VAVNCALTMH KTLYDESGKA LTDLLGLIRS TRPEIVVMAE QEAKHNEPTW 480 ETRLAGSLNY YASVFDSMEH ALPVDSQARI KIEEAFAKEI RNIVAREGSE RTERHESFDR 540 WRKLMQDGGF RCLGIGEGEQ SRMIPRMYSC ENYSIHEQGE GDGLTLKWLH QPLYTVSAWA 600 PADVTDGPST SQPN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 8e-65 | 226 | 601 | 10 | 379 | Protein SCARECROW |
5b3h_D | 8e-65 | 226 | 601 | 10 | 379 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. | |||||
UniProt | Probable transcription factor that acts as positivie regulator of brassinosteroid (BR) signaling (PubMed:19220793, PubMed:22685166). Functions downstream of BRI1 and GSK2 to modulate BR responses. Acts as a direct target of GSK2 kinase to mediate BR responses (PubMed:22685166). Involved in feedback inhibition of BR biosynthetic genes. Repressed by BZR1 (PubMed:19220793). {ECO:0000269|PubMed:19220793, ECO:0000269|PubMed:22685166}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by 24-epibrassinolide. {ECO:0000269|PubMed:19220793}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009412565.1 | 0.0 | PREDICTED: scarecrow-like protein 28 | ||||
Swissprot | Q9CAN3 | 1e-144 | SCL28_ARATH; Scarecrow-like protein 28 | ||||
Swissprot | Q9LWU9 | 1e-144 | DLT_ORYSJ; Protein DWARF AND LOW-TILLERING | ||||
TrEMBL | M0S142 | 0.0 | M0S142_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P18840_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6404 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G63100.1 | 1e-141 | GRAS family protein |
Publications ? help Back to Top | |||
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