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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSMUA_Achr1P18670_001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family |
HD-ZIP |
Protein Properties |
Length: 290aa MW: 33818.5 Da PI: 4.5441 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSMUA_Achr1P18670_001 | genome | CIRAD | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 63.3 | 3.6e-20 | 89 | 144 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rr+R++f++eq++ +e++Fe + ++ +++ +LA++lgL+ rqV +WFqN+Ra++k
GSMUA_Achr1P18670_001 89 RRTRRRFSEEQIKSMESMFETQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWK 144
89*****************************************************9 PP
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2 | HD-ZIP_I/II | 117.9 | 5.7e-38 | 91 | 182 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89
+rr+s+eq+k++E++Fe+++kLep++K +lareLglqprqva+WFqn+RAR+k+kqlE++y+ Lk+ ydal ++ ++L+ke++ L +
GSMUA_Achr1P18670_001 91 TRRRFSEEQIKSMESMFETQTKLEPRQKLQLARELGLQPRQVAIWFQNKRARWKSKQLEREYRGLKADYDALLSSFDSLKKEKQLLLQ 178
589************************************************************************************9 PP
HD-ZIP_I/II 90 elke 93
+l++
GSMUA_Achr1P18670_001 179 QLQD 182
9986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 290 aa
Download sequence Send
to blast |
MNLETRVWER NSSSPSFLQE HLSAADIEQH IHPPTSSPCC CCWWWWWLTE GSACEMMESE 60 EEQSAAEEGD CCSWMNPTAE SSKGKGDRRR TRRRFSEEQI KSMESMFETQ TKLEPRQKLQ 120 LARELGLQPR QVAIWFQNKR ARWKSKQLER EYRGLKADYD ALLSSFDSLK KEKQLLLQQL 180 QDLAELIDKA EERSNRDDEG SNDRDSEIKK DQSSRLSLKE EADLEFAVCA AEEDKKPRYF 240 SEDELNLCAG QPAISSLTSS AEQQFCLTTS WPSDQSCNNS QWWEFWPLSE
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
UniProt | Probable transcription factor that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. {ECO:0000269|PubMed:10732669}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT036173 | 8e-56 | BT036173.1 Zea mays full-length cDNA clone ZM_BFb0099K03 mRNA, complete cds. |
GenBank | BT041114 | 8e-56 | BT041114.1 Zea mays full-length cDNA clone ZM_BFc0176L16 mRNA, complete cds. |
GenBank | EU963550 | 8e-56 | EU963550.1 Zea mays clone 263983 homeodomain-leucine zipper transcription factor TaHDZipI-1 mRNA, complete cds. |
GenBank | KJ727608 | 8e-56 | KJ727608.1 Zea mays clone pUT5468 HB transcription factor (HB126) mRNA, partial cds. |