PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P18080_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Nin-like
Protein Properties Length: 729aa    MW: 81542.9 Da    PI: 8.4342
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P18080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK84.11.3e-26514564252
                 RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            ek++sle+l+ +F++++kdAAk++gvc+T+LKriCRq+GI RWP+R ik++
  GSMUA_Achr1P18080_001 514 EKTVSLEVLRTHFAGSLKDAAKNIGVCPTTLKRICRQHGITRWPSRMIKKV 564
                            899**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.052503584IPR003035RWP-RK domain
PfamPF020422.3E-23516564IPR003035RWP-RK domain
SuperFamilySSF542776.87E-20629710No hitNo description
PROSITE profilePS5174523.418630713IPR000270PB1 domain
SMARTSM006663.7E-25630713IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2403.6E-21630709No hitNo description
CDDcd064074.61E-33631711No hitNo description
PfamPF005642.5E-18631711IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MEAVPRHESL VGRNFSDGAA DLDLLDQLLS RDGWLEFPDC PDVLQAGTPC SMSPLSSLSF  60
SPLFEVNNSS SNPDRLESCS QDDIGRSVVS ASDLSSKPGT RRSIQPSDSN FYVKERFMQA  120
LYHIKDARRD SEVLVQLWVP VKRGDQLILT TYSQPFSLNP NCEKLMNYRE VSTNYHFSAQ  180
ANSGKVLGLP GRVFLGRLPE WTPDVRFFSS YEYLRVDYAQ RLDIRGSIAI PVFDQGSRSC  240
LGVVEVVMTT QKLNYSVELE KICNALQAVD LRSSAVAKHD VLFQVGSGSY QAALPEILEV  300
LKAVCRMHML PLAQTWIPCI QQGKRGIRHS DENYRHCVST SDAAYYVNDP SMIEFHEACS  360
EHHLLRGQGA AGRAFTTNQP CFVSDVTASS KTEYPLSHHA KMFGLRGAVA ICMQSILSGN  420
VDFVLEFFLP TNCILIEEQK QMLDSLSGTI QQVCRTLSVA KSKELADANM NLPPWFTRFS  480
ITTDRGYTEE NSSNFNSTCS EAAKTTAKRR RKSEKTVSLE VLRTHFAGSL KDAAKNIGVC  540
PTTLKRICRQ HGITRWPSRM IKKVDHSLQK LRVVIDSVHG ADKSIQLSSL YKDFTTVSVQ  600
TSTSNISSSS GKKNQIGLHL SAQSTQLFSS IRVKVMYGAE KVRIRLHPTW GFKDLRREIL  660
KRFNIGNKNS VNLRYIDDEL EWILLTCDAD LQECLCIYRS SGARTIKITL QSIDNPPIIV  720
SSRSTGLSF
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009413456.10.0PREDICTED: protein NLP1-like isoform X3
RefseqXP_018679065.10.0PREDICTED: protein NLP1-like isoform X3
RefseqXP_018679068.10.0PREDICTED: protein NLP1-like isoform X3
SwissprotQ9SFW80.0NLP5_ARATH; Protein NLP5
TrEMBLM0S0W60.0M0S0W6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P18080_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55543852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein