PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P17940_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 467aa    MW: 50323.6 Da    PI: 9.2281
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P17940_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-057193123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C+k F r  nL+ H r H
  GSMUA_Achr1P17940_001 71 FVCEVCNKGFQREQNLQLHRRGH 93
                           89*******************88 PP
2zf-C2H212.90.00034147169123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k++  +s+ k H +t+
  GSMUA_Achr1P17940_001 147 WKCDKCSKRYAVQSDWKAHSKTC 169
                            58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.2E-67093IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.91E-77093No hitNo description
PROSITE profilePS5015711.0947193IPR007087Zinc finger, C2H2
PfamPF121712.9E-57193IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00417193IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM00355300112142IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.5E-5135168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.91E-7142167No hitNo description
SMARTSM00355140147167IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MAAASSSVPL FGVREEEDEY GKQPPQPKQQ PLPAQPAAPP PKKKRKLPGN PYPDAEVIAL  60
SPRTLLATNR FVCEVCNKGF QREQNLQLHR RGHNLPWKLK QKNPKEARRR VYLCPEPTCV  120
HHDPSRALGD LTGIKKHYCR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG TREYRCDCGT  180
LFSRRDSFIT HRAFCDALAQ ESARVPSGID LYGNSGISSG LPQVNSQLCS LQTSALNGGS  240
PFLQNMPTNT NASCSPSSAA AAAGNLFNLG FFSNSRSCMN TDEQAATLFA GNLMSNNIDM  300
NMSSLLTSSL HSESAAPQMS ATALLQKAAQ MGATSSRGCF GITYSAAGGS KHASLRDDSK  360
SSGLGESSRT QVENENHLQN LMHSLANGSS GIFGGGNDTE TAALGSDRLT RDFLGVGSMM  420
RSLQGGGMAQ PERQLGIPMA TVDSETKSGS CRLPYGDGSL LSRRSNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35143207367Zinc finger protein JACKDAW
5b3h_F2e-35143207367Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046PKKKRKL
24146KKKRKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act a transcriptional activator of nuclear-encoded photosynthetic gene expression (Probable). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:24821766, ECO:0000305|PubMed:19726569}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by gibberellin. {ECO:0000305|PubMed:17933900}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7548651e-178AY754865.1 Zea mays INDETERMINATE-related protein 7 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398004.10.0PREDICTED: protein indeterminate-domain 5, chloroplastic-like
SwissprotQ8GYC11e-123IDD4_ARATH; Protein indeterminate-domain 4, chloroplastic
TrEMBLM0S0V20.0M0S0V2_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P17940_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-108indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]