PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P17680_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 1278aa    MW: 139127 Da    PI: 7.2771
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P17680_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.0003125150123
                            EEET..TTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                            + C   +C ksF  +s++++Hir  H
  GSMUA_Achr1P17680_001 125 FICAapNCLKSFLKQSDFESHIREaH 150
                            678888*****************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576132No hitNo description
PROSITE patternPS0051809099IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5015710.097125155IPR007087Zinc finger, C2H2
PROSITE patternPS000280127150IPR007087Zinc finger, C2H2
Gene3DG3DSA:2.130.10.103.2E-62816873IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509781.83E-53816858IPR017986WD40-repeat-containing domain
SMARTSM003207.6E-9816855IPR001680WD40 repeat
PfamPF004001.8E-6822854IPR001680WD40 repeat
PROSITE profilePS5029413.132823864IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.285823864IPR001680WD40 repeat
PRINTSPR003207.0E-5842856IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780842856IPR019775WD40 repeat, conserved site
Gene3DG3DSA:2.130.10.103.2E-629301185IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003201.8E-9932970IPR001680WD40 repeat
SuperFamilySSF509781.83E-539331150IPR017986WD40-repeat-containing domain
PfamPF004004.8E-6934969IPR001680WD40 repeat
PROSITE profilePS5029416.6919391021IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.552939979IPR001680WD40 repeat
PRINTSPR003207.0E-5957971IPR020472G-protein beta WD-40 repeat
SMARTSM003201.2E-99731012IPR001680WD40 repeat
PfamPF004009.2E-49751012IPR001680WD40 repeat
PROSITE profilePS5008212.1799791013IPR001680WD40 repeat
PRINTSPR003207.0E-59991013IPR020472G-protein beta WD-40 repeat
SMARTSM003209.110151053IPR001680WD40 repeat
SMARTSM003202610691105IPR001680WD40 repeat
SMARTSM003200.09911061147IPR001680WD40 repeat
PfamPF004000.07711091146IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.103.2E-6212501270IPR015943WD40/YVTN repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1278 aa     Download sequence    Send to blast
MLQIRLRKVS AGDGGGASVK PHPLANTVTV ACPDHLNIAG LPVAKSLGAV TSSAAVRTVG  60
RRSRRNLGER VHFCVRCDFP IAMYGRLVPC EHAFCLTCAR SDASCCLCNE RIQKIQSIKM  120
MEGIFICAAP NCLKSFLKQS DFESHIREAH ADLQSNTKEG GTETEASASS INSCKQLLLQ  180
ETSIAGAPPM SGFSPSTNPQ NHYRDERTRH QQSNDHPFSV VPLHLKPMPF NGPQQRQPGD  240
IQADNNPHPN SWKQGNAFQS SSSNYPPSQP PLLPNYQLSI NSNQAVVPHA AFSYAHHSTK  300
GSEQYYNAPY EIPHTQQVPT GGPAEGSVLG PSPASAGMPS FPGSALCLWG SGQMIVPLNQ  360
HFMRAQGVPE RYMNVTDSQG RIQSMQGDGR QISGGWLLNH SQVGQPSQLQ GVSAVHSDSK  420
GVLAQQVPLP PPQPQPLPTS QQLNAGKVSG FSSDFDPLCV GSPSPSLFLA TSDWSPESGR  480
RVGRQPRERN ADADMRSSAT AVEWEAVAQP PQQQEGDEEE FYESLDRILS SSCSSTSASD  540
DDADHRHRHH QRRAAHFPPP VASSYDVWIS EPSSVEERRR RLLQQMGLIG DPALARAKST  600
APSPDVDPGS GGPRAWEAEA GSSVPSLDSS PPAVSVIVRS RSDGSVDPNR YKETDGSCGG  660
DGGGGYQQCT IRNLDDGSEF VVKEVREDGM WNKLKEVGTG RQLTMEEFEI CVGRSPIVQE  720
LMRRQSVEES GSGGTKRNGY AFEGPGGGLR ANSGNPAGAR FKKKGSCDEK DTSSEKGGRR  780
SSSATDDSLD GSHSLHHGPE KIRVRQYGKS YKELTGLYIT QEIQAHNGAI WSIKFSSDGR  840
YLASGGEDCV IHVWEVVESE RKGELSDGAI GENGNCNPFL AAIGNSSPEP AVAMSCVEGS  900
HWEKKRKAKV PNSRRSVSSD HLMMPDHFFA LSEKPICSFR GHTEDVLDLS WSKSQYLLSS  960
SMDKTVRLWH MSSSSCLKTF SHSDYVTCIQ FNPVDDKYFI SGSLDEKVRI WSIPDRQIVD  1020
WNDLHEMVTA ACFTPNGQAA LVGTHKGSCH LFDTSDNKLH IKNQVYLQTK KKKSSHKKIT  1080
GFQFVPGSSS EVLITSADSR IRVVNGIELV HKFKGFRNTS SQISASLAPN GKYVICASED  1140
SHVYMWRYDA DSQPSRTKGV INSTQSYEHF HCQDVTVAVA WPSTTASGLV VGHSNRQNGL  1200
DLASKCELEV HAQSNGHESS SSPIYSESPL HSRIFSNANY STDLDSVQSR SAWGMVIVTA  1260
GRGGAIRIYQ NFGFPFRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2g9a_A7e-1988311803285WD-repeat protein 5
6byn_W6e-19938118054280WD repeat-containing protein 5
6dy7_A6e-19938118052278WD repeat-containing protein 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398403.10.0PREDICTED: WD repeat-containing protein 44
TrEMBLM0S0S60.0M0S0S6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P17680_0010.0(Musa acuminata)