PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P14370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 575aa    MW: 62816.8 Da    PI: 6.5609
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P14370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.93.6e-13420466455
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                            +h e+Er+RR+++N++f  Lr+++P+ +      K++Ka+ L  A+ YI +Lq
  GSMUA_Achr1P14370_001 420 NHVEAERQRREKLNQRFYALRSVVPNiS------KMDKASLLGDAISYITELQ 466
                            799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.0E-51104295IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.384416465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-19419480IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.04E-15419470No hitNo description
PfamPF000101.2E-10420466IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-19420479IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-17422471IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00704520572No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 575 aa     Download sequence    Send to blast
MNTTSLSPYK TVQGNRFHVC VDGCVLRDGC VDANIYLARF LNPWEWARVE LQGIGTGMGS  60
FWSDEDRQVA VAVLGHQAFD YLNALHTSLS DGHLTAVGGG DADLQTKLQD LVEGTSSSCS  120
SVSAWAYAIF WQISRSGSGD LVLGWGDGHC RELSDGEEEG GIQRLPLDGA NQKMRKRVLE  180
KLHTLAGGSA DENYALRLDR ITDAEMYFLA SMYFSFPKGE DAPGKALASG KHIWISEAGL  240
NSPVCSSYCV RTFLARSAGF RTILFVPFDT GVLELGSMDP VPESFEALHT IRSVFGQGRN  300
KAAAALAAGE KIGENHGAVS ASRFGPEQRP SELITKHGDH HQNIPPTNGA TNQSQPQKPP  360
PPAPQPRRQQ PMPHPLPQSG QIDFSTGEAN SASVGVSVGR LGAPRKRGRK PANGREEPLN  420
HVEAERQRRE KLNQRFYALR SVVPNISKMD KASLLGDAIS YITELQNKLK EMEAEREMWG  480
DPSFMDRKRR AYMHPEIDVE AAQDEVIVRM SCPLDVHPVS KVIQALKDLQ IDVVDSKVAA  540
NSDSVLHTFV VKSPGAEQPT KEKLIAALTQ ELNAT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A5e-28414476264Transcription factor MYC2
5gnj_B5e-28414476264Transcription factor MYC2
5gnj_E5e-28414476264Transcription factor MYC2
5gnj_F5e-28414476264Transcription factor MYC2
5gnj_G5e-28414476264Transcription factor MYC2
5gnj_I5e-28414476264Transcription factor MYC2
5gnj_M5e-28414476264Transcription factor MYC2
5gnj_N5e-28414476264Transcription factor MYC2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00100PBMTransfer from AT1G01260Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682918.10.0PREDICTED: transcription factor bHLH13-like
SwissprotA0A3Q7ELQ21e-152MTB1_SOLLC; Transcription factor MTB1
TrEMBLM0RZU50.0M0RZU5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P14370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73852944
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.39e-73bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]