PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P12410_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 551aa    MW: 60979.1 Da    PI: 7.1422
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P12410_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.86.2e-14186246155
                    AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++gr++A+++d  +   g   k  + ++lg ++ +e+Aa+a++ a++k++g
  GSMUA_Achr1P12410_001 186 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqkrKGrQAVYLGGYDKEEKAARAYDLAALKYWG 246
                            78*******************6555544764338*************************98 PP
2AP2483.2e-15289340155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  GSMUA_Achr1P12410_001 289 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 340
                            78****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541713.66E-16186256IPR016177DNA-binding domain
PfamPF008476.9E-11186246IPR001471AP2/ERF domain
CDDcd000183.51E-20186256No hitNo description
Gene3DG3DSA:3.30.730.101.9E-15187255IPR001471AP2/ERF domain
SMARTSM003802.0E-27187260IPR001471AP2/ERF domain
PROSITE profilePS5103218.255187254IPR001471AP2/ERF domain
PRINTSPR003672.4E-6188199IPR001471AP2/ERF domain
SuperFamilySSF541718.5E-18289350IPR016177DNA-binding domain
PfamPF008474.7E-10289340IPR001471AP2/ERF domain
CDDcd000181.34E-23289350No hitNo description
PROSITE profilePS5103219.072290348IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-18290349IPR001471AP2/ERF domain
SMARTSM003809.1E-33290354IPR001471AP2/ERF domain
PRINTSPR003672.4E-6330350IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 551 aa     Download sequence    Send to blast
MHVDWRHSAI ATTTSCSNPE EQGPKFEDFL GGYSENLNEE NQNLQQPIYH FHDMYYHSSD  60
GPGINVNMPP SFSPAEGGTG EDIQVPYHHI HSFHHNHLFQ DPNAIKPPFF MTDPNQNFTA  120
SAIYNLGMDG STSISGMKSW LRQNQHIPEK QSVDAYECNI QSLSLSMVDR EPVPRKSIET  180
FGQRTSQYRG VTRHRWTGRY EAHLWDNSCR KEGQKRKGRQ AVYLGGYDKE EKAARAYDLA  240
ALKYWGPTTH TNFPLSSYQK DLEEMKDMTR QEFVANLRRK SSGFSRGASV YRGVTRHHQH  300
GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS KYDVKHICSS  360
SHLFGGDLGK RSPKSTPTTS ASANMNQPTS LVVANSEDFS NMLSNTKSDS TSNRVPADAV  420
SLISSSITNP NLWMERQGAE GTIIPTTACM GTFLRHSFAL LQLGQRQGVR VHGAAEALRT  480
LGAVLVEVEV AAVAPVANPV AGDAAPVADE ALLASAGQDA AWVGEMAYPR HSLSLSLSLS  540
LSLALCVMLW L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009404317.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
TrEMBLM0RZ990.0M0RZ99_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P12410_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79738151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-117AP2 family protein