PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P06720_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 151aa    MW: 16163.4 Da    PI: 7.437
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P06720_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-056688123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++Cg  Fs+   L  H+r+H
  GSMUA_Achr1P06720_001 66 HECSICGAEFSSGQALGGHMRRH 88
                           78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003555.13355IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.7043360IPR007087Zinc finger, C2H2
SuperFamilySSF576672.29E-83488No hitNo description
PfamPF139122.5E-93557IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.7E-46488IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139121.3E-136590IPR007087Zinc finger, C2H2
SMARTSM003550.016688IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.7436688IPR007087Zinc finger, C2H2
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MANCLILLAQ GRSLVAGAEN ETAVENASQA EKSTCKTCDK CFPSFQALGG HRTSHKKPKL  60
APPRVHECSI CGAEFSSGQA LGGHMRRHRP ITESSEAKKE KNVLPLDLNL PAPSDDDSQA  120
LPKLPPPAAA FPFETQQPLV FSASALVDCH Y
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin and H(2)O(2). Down-regulated by ascorbate. {ECO:0000269|PubMed:12837949, ECO:0000269|PubMed:16244149}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009394662.11e-97PREDICTED: zinc finger protein ZAT5-like
SwissprotQ681X43e-32ZAT5_ARATH; Zinc finger protein ZAT5
TrEMBLM0RXN01e-106M0RXN0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P06720_0011e-107(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.19e-35C2H2 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]