PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P03860_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 180aa MW: 19303.4 Da PI: 5.0217 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.9 | 4.5e-17 | 14 | 63 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+G+r+++ g+Wv+eIr+p++ ++r++lg++ tae+Aa a++ a+ +l+g GSMUA_Achr1P03860_001 14 PSYRGIRYRS--GKWVSEIREPRK---STRIWLGTYTTAEMAAVAYDVAAHALRG 63 57*****976..*********843...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.84E-27 | 14 | 73 | No hit | No description |
Pfam | PF00847 | 2.5E-10 | 14 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-19 | 15 | 73 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.796 | 15 | 71 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-29 | 15 | 77 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-27 | 15 | 72 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence Send to blast |
MEPRVRAGAS RRHPSYRGIR YRSGKWVSEI REPRKSTRIW LGTYTTAEMA AVAYDVAAHA 60 LRGTDAQLNF PDQIASRPSP LSSSPTHIRV AAAEAAASLM PSSGAGDESD GAAAAAAAAV 120 DTVASQQQPG SYIDEEEIFD MPQLLVNMAE GMLMSPPRLS PHGSDDSPEV SEGESLWSYR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 4e-14 | 16 | 76 | 6 | 68 | ATERF1 |
3gcc_A | 4e-14 | 16 | 76 | 6 | 68 | ATERF1 |
5wx9_A | 8e-14 | 8 | 73 | 7 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00558 | DAP | Transfer from AT5G52020 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009389544.1 | 1e-127 | PREDICTED: ethylene-responsive transcription factor ERF027-like | ||||
Swissprot | Q9FJ90 | 9e-47 | ERF25_ARATH; Ethylene-responsive transcription factor ERF025 | ||||
TrEMBL | M0RWU4 | 1e-126 | M0RWU4_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P03860_001 | 1e-127 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3654 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52020.1 | 4e-38 | ERF family protein |
Publications ? help Back to Top | |||
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