PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr1P03120_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 602aa MW: 67308.5 Da PI: 6.4547

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr1P03120_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.6e-05	64	85	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C++ F + n++rHir+H GSMUA_Achr1P03120_001 64 KCEKCSREFCSTINYRRHIRVH 85 8*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.097	63	85	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	65	85	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 602 aa Download sequence Send to blast
MNMITEPVQF LENNKAPQTL IMSTSQQIQA LKIPEAVVAL AQAAGKVTDL PGWSLFPCTV 60 QMLKCEKCSR EFCSTINYRR HIRVHRRSLN IDKDSTKNRM LLGVFWDKLP LEEAKEISSF 120 KNVDIEDVTG SSIIRALKTS VQNLGLPLLP HIYVKAGTTL LNVIEGSPSR FPISSQELFG 180 VLDDASEETF LCAGSTLSMQ KYIFSGDAGK IALETKNSVA FASFMLEQKL VKSWYADKDI 240 EALKCQRVLM EEEEVAKKRQ AELQERKRLK KLRKKEKRVN ISTGVANAKN EKCLFDTVEA 300 TCSSIETLNE MLACEFCQNT SKEPVCQETQ CGEATRLVEP QLDWNRRQHS HPDNADQTVD 360 QKIKAKASEC QITTTSGQVP MSAQISPNGH VLGEVPSAKS SVTSTNDLMI LTSKTVPDRE 420 DANERNTDPK ARYSYNEHEV LIGSISVTLR KGYDDSREAS ALVQKHFKKL AKNDLHPSSA 480 IRTTIELHRP VCHDIADSTT EKIATEGNQF HSDAFNQISV EDIYLSSVAM VDSGTDKCWN 540 SFTDLGDAGL SLPRMFSSQI ARAFLAERWK ESMIADHVTL TLPSDLEATR LSSEFEVQDR 600 RL

Sequence ? help Back to Top

Protein Sequence Length: 602 aa Download sequence Send to blast

MNMITEPVQF LENNKAPQTL IMSTSQQIQA LKIPEAVVAL AQAAGKVTDL PGWSLFPCTV  60
QMLKCEKCSR EFCSTINYRR HIRVHRRSLN IDKDSTKNRM LLGVFWDKLP LEEAKEISSF  120
KNVDIEDVTG SSIIRALKTS VQNLGLPLLP HIYVKAGTTL LNVIEGSPSR FPISSQELFG  180
VLDDASEETF LCAGSTLSMQ KYIFSGDAGK IALETKNSVA FASFMLEQKL VKSWYADKDI  240
EALKCQRVLM EEEEVAKKRQ AELQERKRLK KLRKKEKRVN ISTGVANAKN EKCLFDTVEA  300
TCSSIETLNE MLACEFCQNT SKEPVCQETQ CGEATRLVEP QLDWNRRQHS HPDNADQTVD  360
QKIKAKASEC QITTTSGQVP MSAQISPNGH VLGEVPSAKS SVTSTNDLMI LTSKTVPDRE  420
DANERNTDPK ARYSYNEHEV LIGSISVTLR KGYDDSREAS ALVQKHFKKL AKNDLHPSSA  480
IRTTIELHRP VCHDIADSTT EKIATEGNQF HSDAFNQISV EDIYLSSVAM VDSGTDKCWN  540
SFTDLGDAGL SLPRMFSSQI ARAFLAERWK ESMIADHVTL TLPSDLEATR LSSEFEVQDR  600
RL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	271	ERKRLKKL
2	269	277	KKLRKKEKR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009390379.1	0.0	PREDICTED: uncharacterized protein LOC103976778
TrEMBL	M0RWM0	0.0	M0RWM0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr1P03120_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8503	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	2e-75	C2H2-like zinc finger protein