![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr1P01360_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 214aa MW: 22638.6 Da PI: 7.0998 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.8 | 6.3e-37 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC ++Cv+ap+f++e+ +++fa++hk+FGasn +kll +lp+ +r++a+ ++ yeA+ar+ dPvyG+v+ i++lq+q+ GSMUA_Achr1P01360_001 7 PCGACKFLRRKCLSGCVFAPHFCHEKgAAHFAAIHKVFGASNASKLLMHLPPADRSEAAVTISYEAQARLLDPVYGCVAQIFALQRQV 94 7***********************9989************************************************************ PP DUF260 88 eqlkaelallkee 100 l+a+la+lk++ GSMUA_Achr1P01360_001 95 VLLQAQLASLKAQ 107 ********99987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.903 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.8E-35 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 214 aa Download sequence Send to blast |
MAGCGSPCGA CKFLRRKCLS GCVFAPHFCH EKGAAHFAAI HKVFGASNAS KLLMHLPPAD 60 RSEAAVTISY EAQARLLDPV YGCVAQIFAL QRQVVLLQAQ LASLKAQAQL ALGNGTTSPG 120 EGIAPPAYAS IFSTNDWLAD CNSCRSSHDC NSHFAMVEDE AMVFRIQSED APRSMASLDV 180 QAGPWRSSAS SSSSSSYTDV EGLLSVAFAY PGRS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-36 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-36 | 3 | 101 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009398387.1 | 1e-157 | PREDICTED: LOB domain-containing protein 17-like | ||||
Swissprot | Q5UG13 | 2e-59 | LBD_ORYSJ; LOB domain-containing protein CRL1 | ||||
TrEMBL | M0RW44 | 1e-156 | M0RW44_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P01360_001 | 1e-156 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2501 | 38 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42440.1 | 4e-48 | LBD family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|