PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr1P01350_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 201aa MW: 21789.7 Da PI: 8.1317 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 122.6 | 2e-38 | 8 | 109 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkCa+dCv+apyf +eq + +fa++hk+FGasn kll ++p+ +r +a+ +++yeA+ar++dPvyG+vg+i++lqqq+ GSMUA_Achr1P01350_001 8 PCGACKFLRRKCASDCVFAPYFSSEQgAVRFAAIHKVFGASNAAKLLLHVPQADRCEAAVAIAYEAQARLKDPVYGCVGHIFALQQQV 95 7***********************9989************************************************************ PP DUF260 88 eqlkaelallkeel 101 +l+ +l l+k+++ GSMUA_Achr1P01350_001 96 TTLQLQLMLVKAQI 109 *******9999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.904 | 7 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.9E-37 | 8 | 106 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MASGTGSPCG ACKFLRRKCA SDCVFAPYFS SEQGAVRFAA IHKVFGASNA AKLLLHVPQA 60 DRCEAAVAIA YEAQARLKDP VYGCVGHIFA LQQQVTTLQL QLMLVKAQIA QRLVTSQPSG 120 SQWQGNDDGN PFLQPYSSWE SMSSSQSSRN FINQDSTRLL PKHDAVFKED LSVGGSSSKM 180 WATHAEVGEL QDLAFRMAGN L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 4 | 102 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 4 | 102 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009398266.1 | 1e-149 | PREDICTED: LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 5e-61 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | M0RW43 | 1e-148 | M0RW43_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr1P01350_001 | 1e-148 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10599 | 34 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 2e-46 | lateral organ boundaries-domain 16 |