PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P00490_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 205aa    MW: 23585.8 Da    PI: 10.7528
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P00490_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-1870120255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr+++ +g+++AeIrdp +  k +r++lg+f+ta +Aa a+++a+ +++g
  GSMUA_Achr1P00490_001  70 HYRGVRRRP-WGKFAAEIRDPAK--KGARVWLGTFDTAVDAALAYDRAAYRMRG 120
                            7********.**********954..34*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.3E-3269129IPR001471AP2/ERF domain
PfamPF008471.0E-1270120IPR001471AP2/ERF domain
SMARTSM003801.4E-3770134IPR001471AP2/ERF domain
CDDcd000181.19E-2970128No hitNo description
PROSITE profilePS5103223.89470128IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-2370130IPR016177DNA-binding domain
PRINTSPR003673.4E-137182IPR001471AP2/ERF domain
PRINTSPR003673.4E-13110130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MCIPETDVAL LEYVRRYLLD DPEPHPCELS SSAANLPRAP TRHRSSRFED QRNDGWTPSS  60
VDPLPAEERH YRGVRRRPWG KFAAEIRDPA KKGARVWLGT FDTAVDAALA YDRAAYRMRG  120
SRALLNFPLQ IGSEETSEPI GGRKRRRRPS HRLLSRPRSP SQKARCRNQF SRRPVRNSVN  180
LNERCANLEL IRLDCFITLV VPNEI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-3666135170ATERF1
3gcc_A6e-3666135170ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1142146RKRRR
2145152RRRPSHRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389467.14e-99PREDICTED: ethylene-responsive transcription factor ERF107-like
TrEMBLM0RVV71e-147M0RVV7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P00490_0011e-147(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.11e-26ethylene responsive element binding factor 1