PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr1P00480_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 196aa    MW: 21224.9 Da    PI: 8.0569
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr1P00480_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38e-1864114255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                            +y+GVr ++ +g+++AeIrdp   + +  r++lg+f+ta +Aa+a+++a+ +++g
  GSMUA_Achr1P00480_001  64 RYRGVRERP-WGKFAAEIRDP---NrRGSRVWLGTFDTAVDAARAYDRAAFQMRG 114
                            7*****888.**********9...4334*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.3E-3664128IPR001471AP2/ERF domain
CDDcd000186.76E-1964123No hitNo description
SuperFamilySSF541711.44E-2264124IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-3264123IPR001471AP2/ERF domain
PROSITE profilePS5103224.43464122IPR001471AP2/ERF domain
PfamPF008471.9E-1264114IPR001471AP2/ERF domain
PRINTSPR003671.5E-106576IPR001471AP2/ERF domain
PRINTSPR003671.5E-1088104IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MASGIGGFGD PTLDFIREHL FADLPPTPPS SAFSLPPPVA TGSGYRFPEP DEKRPAAGQG  60
DARRYRGVRE RPWGKFAAEI RDPNRRGSRV WLGTFDTAVD AARAYDRAAF QMRGRKAILN  120
FPNEIGCSGD RASPPLPAAS GKRKRDAEEH LPSGCPLSPS SWDSLWGFEE SDTKGLFDMP  180
PLSPLPSLGC AQLLVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2763125466ATERF1
3gcc_A5e-2763125466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009389354.11e-117PREDICTED: ethylene-responsive transcription factor ERF105-like
SwissprotQ8VY902e-48EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLM0RVV61e-138M0RVV6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr1P00480_0011e-138(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-42ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  3. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  4. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]