PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P25820_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

HD-ZIP

Protein Properties

Length: 789aa MW: 86519.2 Da PI: 5.9545

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P25820_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	63.2	3.8e-20	99	155	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++ +++t++q++e+e++F+++++p+ ++r eL+++lgL+ qVk+WFqN+R+++k+ GSMUA_Achr11P25820_001 99 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRNELSRQLGLEPLQVKFWFQNKRTQMKN 155 678899************************************************995 PP
2	START	224.3	3.8e-70	265	485	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla. 77 ela +a++el+++a+++ep+W e +n+de++++f+++ + ++ea+r+++vv+m+++ +ve+l+d++ qW + + GSMUA_Achr11P25820_001 265 ELAVAAMEELIRMAQLSEPLWIPGLdgaaETLNEDEYVRTFPRGIGpkllgLKSEASRETAVVIMNQMHVVEILMDVN-QWANVFSg 350 57899***************999999***********999****************************.**** PP ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEE CS START 78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgili 154 +a tlev+s+g galq+m+ae+q++splvp R+++fvRy++q+ +g+w++vdvS+ds ++ p v R++++pSg+li GSMUA_Achr11P25820_001 351 ivsRALTLEVLSTGvagnynGALQVMSAEFQVPSPLVPtRESLFVRYCKQHADGTWAVVDVSLDSLRPSP----VLRCRRRPSGCLI 433 ****************************************************************98....7******** PP EEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 155 epksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++++ng+skvtwvehv++++r++h+++r+lv+sgla+gak+wv+tl+rqce+ GSMUA_Achr11P25820_001 434 QEMPNGYSKVTWVEHVEVDDRSVHNIYRPLVNSGLAFGAKRWVSTLDRQCER 485 ************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.5E-22	78	154	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.46E-19	87	156	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.022	96	156	IPR001356	Homeobox domain
SMART	SM00389	7.5E-20	97	160	IPR001356	Homeobox domain
CDD	cd00086	1.87E-19	98	157	No hit	No description
Pfam	PF00046	9.6E-18	99	154	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	131	154	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	44.084	256	488	IPR002913	START domain
SuperFamily	SSF55961	5.5E-36	259	487	No hit	No description
CDD	cd08875	1.74E-127	260	484	No hit	No description
SMART	SM00234	4.6E-68	265	485	IPR002913	START domain
Pfam	PF01852	4.3E-59	266	485	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	1.9E-6	361	484	IPR023393	START-like domain
SuperFamily	SSF55961	2.2E-23	504	714	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 789 aa Download sequence Send to blast
MPVGLMIPAR QPPSMIGRNT GTGYGSSSVL SLSQPNLLEG QQIPLQHQHH NQFVEIAQAT 60 TAESEMARAR EDDFESKSCS ENIEGASGDD QDQNQRPRKK RYHRHTQHQI QEMEAFFKEC 120 PHPDDKQRNE LSRQLGLEPL QVKFWFQNKR TQMKNQHERQ ENSQLRADNE KLRADNLRYK 180 EALSNASCPN CGGPAALGEM SFDEHNLRIE NVRLREEIDR ISGIAAKYVG KPVASYPLLS 240 PAIPSRSPLD LGVGGLGIEK PVVIELAVAA MEELIRMAQL SEPLWIPGLD GAAETLNEDE 300 YVRTFPRGIG PKLLGLKSEA SRETAVVIMN QMHVVEILMD VNQWANVFSG IVSRALTLEV 360 LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ESLFVRYCKQ HADGTWAVVD VSLDSLRPSP 420 VLRCRRRPSG CLIQEMPNGY SKVTWVEHVE VDDRSVHNIY RPLVNSGLAF GAKRWVSTLD 480 RQCERLASVM ASNIPSGDIG VITTPEGRKS MLKLAERMVI SFCGGVGGSA SHQWTTLSGS 540 GAEDVRVMTR KSVDDPGRPP GIVLNAATSF WLPVPPKRVF DFLRDESSRS EWDILSNGGG 600 VQEMAHIANG RDHGNCVSLL RVNSTNSSQS NMLILQESCT DSTGSYVIYA PVDVIAMNVV 660 LNGGDPDYVA LLPSGFAILP DGPCGGQGGE MVDGVGSGGS LLTVAFQILV DSAPTAKLSL 720 GSCPLSLKNT QDMQERVEFG ASIVGSQERT SDLPCSVVLV WRPGSNNPIY SLISHHFILC 780 FVLFLWCWL

Sequence ? help Back to Top

Protein Sequence Length: 789 aa Download sequence Send to blast

MPVGLMIPAR QPPSMIGRNT GTGYGSSSVL SLSQPNLLEG QQIPLQHQHH NQFVEIAQAT  60
TAESEMARAR EDDFESKSCS ENIEGASGDD QDQNQRPRKK RYHRHTQHQI QEMEAFFKEC  120
PHPDDKQRNE LSRQLGLEPL QVKFWFQNKR TQMKNQHERQ ENSQLRADNE KLRADNLRYK  180
EALSNASCPN CGGPAALGEM SFDEHNLRIE NVRLREEIDR ISGIAAKYVG KPVASYPLLS  240
PAIPSRSPLD LGVGGLGIEK PVVIELAVAA MEELIRMAQL SEPLWIPGLD GAAETLNEDE  300
YVRTFPRGIG PKLLGLKSEA SRETAVVIMN QMHVVEILMD VNQWANVFSG IVSRALTLEV  360
LSTGVAGNYN GALQVMSAEF QVPSPLVPTR ESLFVRYCKQ HADGTWAVVD VSLDSLRPSP  420
VLRCRRRPSG CLIQEMPNGY SKVTWVEHVE VDDRSVHNIY RPLVNSGLAF GAKRWVSTLD  480
RQCERLASVM ASNIPSGDIG VITTPEGRKS MLKLAERMVI SFCGGVGGSA SHQWTTLSGS  540
GAEDVRVMTR KSVDDPGRPP GIVLNAATSF WLPVPPKRVF DFLRDESSRS EWDILSNGGG  600
VQEMAHIANG RDHGNCVSLL RVNSTNSSQS NMLILQESCT DSTGSYVIYA PVDVIAMNVV  660
LNGGDPDYVA LLPSGFAILP DGPCGGQGGE MVDGVGSGGS LLTVAFQILV DSAPTAKLSL  720
GSCPLSLKNT QDMQERVEFG ASIVGSQERT SDLPCSVVLV WRPGSNNPIY SLISHHFILC  780
FVLFLWCWL

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009385059.1	0.0	PREDICTED: homeobox-leucine zipper protein ROC2-like
Swissprot	Q0J9X2	0.0	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	M0RVG2	0.0	M0RVG2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P25820_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP799	38	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04890.1	0.0	protodermal factor 2

Publications ? help Back to Top
Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]