PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P24730_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 587aa    MW: 62391.2 Da    PI: 7.6568
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P24730_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.34.8e-07229249526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             +C  f++ G C+ Gd C +aHg
  GSMUA_Achr11P24730_001 229 PCLEFRK-GSCRNGDACEYAHG 249
                             8999***.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127968.0E-964134IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.71E-1167161IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.43469134IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.1E-1369171IPR020683Ankyrin repeat-containing domain
SMARTSM00248256999IPR002110Ankyrin repeat
CDDcd002043.40E-971161No hitNo description
PROSITE profilePS500888.923104134IPR002110Ankyrin repeat
SMARTSM002480.023104136IPR002110Ankyrin repeat
PROSITE profilePS5010312.512224251IPR000571Zinc finger, CCCH-type
SMARTSM003566.0E-5224250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-4229250IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4229249IPR000571Zinc finger, CCCH-type
SMARTSM0035655259282IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MCSGHRKLSP PSASGEAKQP SSETAALLLE IAASDDLAAF KRAVEDEGHP FDVAAHWYGR  60
SPSRGMGYQQ RTPLMIAALY GSTGVMGYLL SARPAEAARR AASDGVTALH CAAAGGSPAS  120
LEAVKLLIGA DADVVDALDA SGNRPGDVVA RQSLSTVAKS LGKKEYPPDS TLPDINTGIY  180
GTDEFRMYTF KIKPCSRAYS HDWTECPFVH PGENARRRDP RKFSYSCVPC LEFRKGSCRN  240
GDACEYAHGV FESWLHPAQY RTRLCKDETC CNRRVCFFAH KPEELRTVNH SAASVAGTLL  300
SSPRSSSPAL SSLDMAMALT MMQQPGSPMS PTASSGLGAA AAWMNQAGGS MTPPALQLPS  360
SRLKASLSAR ELDFDLELLG LEGYQQKLVD GITRTASPRA NRGANTLVAA AAAARAPEYT  420
DLLGSMHQPQ LLSGYGGNQC SSPPVSSTSS FGLDHSMAKA IMNSRASAFA MRSQSFCDRG  480
ATAGRQSMLS AMTTAAAAGA TPSLLSDWSS PDGKLEWGIQ GEELNKLRKS TSFALRSNHA  540
TFGRVEASGP NEPDVSWVRS LVKDGLGAGE HQNADMFSPW AEEKIMA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384917.10.0PREDICTED: zinc finger CCCH domain-containing protein 33-like
SwissprotQ688R31e-176C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLM0RV530.0M0RV53_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P24730_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.11e-138C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]