PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr11P23850_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 265aa MW: 28800 Da PI: 7.6238

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr11P23850_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.7	3e-39	30	91	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 +e+al+cprC stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+sss GSMUA_Achr11P23850_001 30 PEHALQCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTQGGSLRNVPVGGGCRKTKRSSS 91 67899*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-24	23	83	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-33	32	88	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.031	34	88	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	36	72	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence Send to blast
MCSRGLEEVV ACPKTQQQQQ QQDRKARPHP EHALQCPRCA STNTKFCYYN NYSLSQPRYF 60 CKGCRRYWTQ GGSLRNVPVG GGCRKTKRSS SSSSKKAAPF LVPSPLSHDP SDDLTSLQKP 120 LPMKQFGSDH ENGHNFLVGN TNTDPFSFLV NDSDPMPSAP TPTKGFLDYL RNGLVDISSP 180 SSFSNIDYDY GLGTSGSWGM PTGAGLSGAT AGTTTCQGSC KPMDGGDGHV EMSLLWQDGS 240 MDSERDYCWN GVGPSWQGLI NSSLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009384803.1	0.0	PREDICTED: dof zinc finger protein DOF5.3-like isoform X1
TrEMBL	M0RUW5	0.0	M0RUW5_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P23850_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4704	32	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	4e-32	Dof family protein