PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P22400_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Nin-like
Protein Properties Length: 779aa    MW: 87261.3 Da    PI: 5.6369
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P22400_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK919.4e-29524574252
                  RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                             e ++sl++l+kyF++++kdAA++Lgvc+T+LKriCRq+GI RWP+Rkik++
  GSMUA_Achr11P22400_001 524 ERTVSLQELQKYFAGSLKDAARSLGVCPTTLKRICRQHGITRWPSRKIKKV 574
                             6789*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.837513594IPR003035RWP-RK domain
PfamPF020424.6E-26526574IPR003035RWP-RK domain
SuperFamilySSF542771.16E-22681768No hitNo description
SMARTSM006661.9E-24682765IPR000270PB1 domain
PROSITE profilePS5174526.574682765IPR000270PB1 domain
CDDcd064078.39E-39683764No hitNo description
Gene3DG3DSA:3.10.20.2401.5E-24683763No hitNo description
PfamPF005642.0E-18684764IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MDDSVPPKGS LSGQTLSDAA VDDLDLMDEL LSGSVFDCSD LLQTGTSAST GPLSSACFSP  60
VLGISSTSSN PTLAGIDYQV DAERSVFSVE LASDEAQMQM LDGMSRQIQP KGETGSVEQR  120
LRYVLKYIKE SQREGDVLVQ MWVPAMRGNQ QVVTTCGQPF LLDFNCQRLV NYRLPEWTPD  180
VRYFSSFEYP RVGDAQRYDV RGTIALPIFE RNSPSCLGVV EVVMTTQKVN YSYDLENICN  240
ALQAVDLRSS EVLSVPRLKM TGDSYLAAIP EIQMVLRTAC ETHRLPLSQT WISCIQQGRE  300
GSRHSDESFS ECVSTIDEAC YIQDPSMLGF QQACSEHHLF RGQGLVGKAF MTNQPCFSSD  360
VTEFSKIEYP LSHHAKLFHL RAAVAIRLRC VHSGNVDFVL EFFLPIHCIE GEEQKLMLNS  420
LSVTIQQVCQ TLRVVTTREL EDETMLENNE QIPSDMFSDN SVSAIGQRYI VDELLPSGTP  480
AVGIPKNVKQ HHGESNSDYI VSFSAETNVS NAEKATEKRR AKTERTVSLQ ELQKYFAGSL  540
KDAARSLGVC PTTLKRICRQ HGITRWPSRK IKKVGRSLRK LQVVIDSVHG PGEAFQFSSL  600
YESFIKNTRS DSNLATKGRF TSHTSGTNSL SSSSCSQNSN SSQGCSSEQR QCNQTHEFEF  660
RQATLVEENR SDIEHHPSRC DFLKVKAIYG EEKVIFRLQP TWGFQDLKQE IRRRFVIYDT  720
TLVDIKYLDE DSEWILITCD EDLKECIDVY RSTQAQTIKL CVHHVQPTAR SSLGSTALS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384610.10.0PREDICTED: protein NLP1-like isoform X1
RefseqXP_018675663.10.0PREDICTED: protein NLP1-like isoform X1
SwissprotQ10S830.0NLP1_ORYSJ; Protein NLP1
TrEMBLM0RUH00.0M0RUH0_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P22400_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55543852
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.10.0Nin-like family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]