![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr11P21760_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 272aa MW: 29707.5 Da PI: 6.7454 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 122.5 | 1.4e-38 | 64 | 124 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stntkfCyynnysl+qPry+Ck+C+ryWt+GG+lrnvPvGgg+rknk+s+ GSMUA_Achr11P21760_001 64 KEQALSCPRCNSTNTKFCYYNNYSLTQPRYLCKSCKRYWTEGGSLRNVPVGGGSRKNKRST 124 7899******************************************************975 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-27 | 60 | 122 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.7E-33 | 66 | 122 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.668 | 68 | 122 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 70 | 106 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 272 aa Download sequence Send to blast |
MLCSASDLSP LWRSGVVGLQ EIGLAVEPME LVPSSAFTTT TTTANSTCTT ARPQVTERRA 60 RQQKEQALSC PRCNSTNTKF CYYNNYSLTQ PRYLCKSCKR YWTEGGSLRN VPVGGGSRKN 120 KRSTTAASAM ASHSEKLPTD LIPPPVSLAA TQRFHQGQDL NLAFPDPEPI GFSNPSDAVG 180 ALSAMEFLRT GMTARDFKPY LPLMQLPEYS TAFELQELGP PALNFPMMGF PFEDVKPGAH 240 TTSTADEFEK SREQGGDPPG FWNSMIGGEG SW |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250|UniProtKB:Q6K537}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384536.1 | 0.0 | PREDICTED: dof zinc finger protein DOF1.8-like | ||||
Swissprot | Q9SXG8 | 1e-39 | DOF1_ORYSJ; Dof zinc finger protein 1 | ||||
TrEMBL | M0RUA6 | 0.0 | M0RUA6_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P21760_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2369 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G24060.1 | 6e-38 | Dof family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|