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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P21440_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | bHLH | ||||||||
Protein Properties | Length: 285aa MW: 32401.7 Da PI: 6.8354 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.2 | 5.2e-12 | 110 | 161 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+ +N +++Lr+l+P++ ++ + a+i A+e++k+L+ GSMUA_Achr11P21440_001 110 QRMTHIAVERNRRHLMNVHLATLRSLMPPS---FVQRGDQASIIGGAIEFVKELE 161 79***************************9...9******************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 4.97E-14 | 108 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.1E-12 | 108 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.62E-9 | 108 | 164 | No hit | No description |
PROSITE profile | PS50888 | 14.469 | 109 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-9 | 110 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.5E-9 | 115 | 166 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MSCGSLSSHQ TPVLRLLQGA MQAGEEMVEE EVQLHLQQYQ HRRFFTSYPQ ETNFQLLRRM 60 QSQCHFRQLR MAEMDRSCAV EQLESCVTHV SEKRQRPASA SKSAEEAESQ RMTHIAVERN 120 RRHLMNVHLA TLRSLMPPSF VQRGDQASII GGAIEFVKEL EQHLLSLRAQ KRFRESAFAR 180 SSSDDDDPCQ EAHQEDWTGV DVEATLVQGH VNLKVAGRRQ RGQLVRAIAA MEELRLSILH 240 LNITSLGPSS ILYSLNLKME EECKLGTADE IATAVHQIFS YNSNC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 110 | 121 | RMTHIAVERNRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009385236.1 | 0.0 | PREDICTED: transcription factor bHLH57-like | ||||
Swissprot | O81037 | 1e-60 | BH070_ARATH; Transcription factor bHLH70 | ||||
TrEMBL | M0RU74 | 0.0 | M0RU74_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P21440_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7957 | 33 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46810.1 | 1e-58 | bHLH family protein |
Publications ? help Back to Top | |||
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