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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P19350_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 224aa MW: 25851.8 Da PI: 6.7252 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 79.4 | 2.5e-25 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr+g+lKKA ELSvLCda++ +iifs +gklye + GSMUA_Achr11P19350_001 10 RIENPVHRQVTFCKRRAGLLKKARELSVLCDADIGIIIFSAHGKLYELA 58 8*********************************************965 PP | |||||||
2 | K-box | 54.6 | 4.7e-19 | 85 | 173 | 12 | 99 |
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLe.sLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 + +++++e++ Lk+ei+ L +++R + Ge+ + ++l+e+ Le++Le +++iR+ K+++++++i+ l++ke +l+ +n+ L++k GSMUA_Achr11P19350_001 85 NPPQESEREISMLKQEINLLHKSLRYMFGEGTSgHMTLEEMYALERHLEIWMEHIRTMKMQIMFQEIQSLKNKEGMLRATNEFLQEK 171 5568999***********************98537**************************************************** PP K-box 98 le 99 + GSMUA_Achr11P19350_001 172 IV 173 96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 4.5E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.324 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.76E-27 | 1 | 76 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 9.60E-40 | 3 | 75 | No hit | No description |
Pfam | PF00319 | 1.0E-23 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 7.1E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 12.018 | 87 | 178 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 2.1E-22 | 88 | 172 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MVRGKVQLRR IENPVHRQVT FCKRRAGLLK KARELSVLCD ADIGIIIFSA HGKLYELATK 60 GTMEGLIERY KMTSEEPQPA SADVNPPQES EREISMLKQE INLLHKSLRY MFGEGTSGHM 120 TLEEMYALER HLEIWMEHIR TMKMQIMFQE IQSLKNKEGM LRATNEFLQE KIVEQNGHFD 180 VAPMTVQQNG HFDVAPLTAT DIPYPLTIQS QLNNFWGPEQ GFSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 3e-15 | 1 | 87 | 1 | 83 | MEF2 CHIMERA |
6byy_B | 3e-15 | 1 | 87 | 1 | 83 | MEF2 CHIMERA |
6byy_C | 3e-15 | 1 | 87 | 1 | 83 | MEF2 CHIMERA |
6byy_D | 3e-15 | 1 | 87 | 1 | 83 | MEF2 CHIMERA |
6bz1_A | 3e-15 | 1 | 86 | 1 | 82 | MEF2 CHIMERA |
6bz1_B | 3e-15 | 1 | 86 | 1 | 82 | MEF2 CHIMERA |
6bz1_C | 3e-15 | 1 | 86 | 1 | 82 | MEF2 CHIMERA |
6bz1_D | 3e-15 | 1 | 86 | 1 | 82 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009384283.1 | 1e-168 | PREDICTED: MADS-box transcription factor 26 | ||||
Swissprot | A2YQK9 | 1e-100 | MAD26_ORYSI; MADS-box transcription factor 26 | ||||
Swissprot | Q0J8G8 | 1e-100 | MAD26_ORYSJ; MADS-box transcription factor 26 | ||||
TrEMBL | M0RTL5 | 1e-167 | M0RTL5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P19350_001 | 1e-168 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1491 | 36 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 1e-68 | AGAMOUS-like 12 |
Publications ? help Back to Top | |||
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