PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr11P16890_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 511aa    MW: 56512.3 Da    PI: 8.9965
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr11P16890_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.41.2e-0595117123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             ++C+ C+k F r  nL+ H r H
  GSMUA_Achr11P16890_001  95 FVCEVCNKGFQREQNLQLHRRGH 117
                             89*******************88 PP
2zf-C2H215.35.5e-05174196123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             +kC++C+k++  +s+Lk H +t+
  GSMUA_Achr11P16890_001 174 WKCNKCSKRYAVRSDLKAHSKTC 196
                             58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.58E-894117No hitNo description
Gene3DG3DSA:3.30.160.606.9E-694117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.09495117IPR007087Zinc finger, C2H2
PfamPF121713.2E-595117IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.004195117IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.605.4E-5161195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576679.58E-8169194No hitNo description
SMARTSM0035552174194IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MASASSSSSP LLGIKDEELQ HEQKQQQQSS SATLPATLKK KRNQPGNPSK YLKHSSTFIE  60
SLHNYILLFT SIISADPEVE VIALSPETLL ATNRFVCEVC NKGFQREQNL QLHRRGHNLP  120
WKLRLRSGEE EGRRRRRVYL CPEPTCAHHH PSRALGDLTG VKKHFCRKHG EKRWKCNKCS  180
KRYAVRSDLK AHSKTCGNCE YRCECGTLFS RRDSFITHRA FCDALAQESS RLPAAGLDLH  240
GNNTMALSVS QMNARLTSTS SIRNSNNGGD QYNQMLLASD FSDANGRSEL TSLFSGNLVS  300
DHVAGGLTSL YNQNESNLLP RMSATALLQK AAQMGSMTNI GHSLLRGFGN SSSSSPRPPN  360
TGGGNSGDGL QARTENETHL RNLMNSLANG RTGLIGGPQQ ETREFGSDAK LNLWGTDQLT  420
RDFLGVGGMV MRSISGGTSR QEQNHGIDMS DRTLIPYLPF VASSTSYHQI SPIDTDNSVS  480
GRCRPDHLTW CQWELCIHTL MHSNSDQPRI Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-28170234367Zinc finger protein JACKDAW
5b3h_F1e-28170234367Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009384020.11e-133PREDICTED: protein indeterminate-domain 5, chloroplastic
SwissprotQ8H1F52e-93IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM0RSW90.0M0RSW9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr11P16890_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.13e-90indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]