PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr11P16550_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 260aa MW: 28236 Da PI: 7.5852 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.7 | 4.8e-06 | 33 | 55 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg++F+ +++L+ H+ + H GSMUA_Achr11P16550_001 33 SCSECGEVFTKPETLELHQAVrH 55 7******************9888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 9.515 | 32 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 32 | 55 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF56399 | 1.25E-20 | 57 | 256 | No hit | No description |
Gene3D | G3DSA:3.90.228.10 | 2.7E-11 | 58 | 256 | IPR012317 | Poly(ADP-ribose) polymerase, catalytic domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003950 | Molecular Function | NAD+ ADP-ribosyltransferase activity | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 260 aa Download sequence Send to blast |
MQLPKLAGCY ECHAVSIDPS SRRYPRPRTT LCSCSECGEV FTKPETLELH QAVRHAVSEL 60 GTEDSACNVV EIIFKSSWQK KDRPICKIER ILKVHNAPSA VAPFEDYRAA VKFRRRHHPS 120 RCAADGNELL RFHCTSLACA LGARGSTSLC SGSSSSAPCS VCTIIRHGFG GAHHPRGVRT 180 TASSGRAHDA SGGGERRAML VCRVIAGRVR RPCDEEEDED EDAYDSVAVG DSGGNLEELL 240 VANPTAILPC FVVIYRALLD |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009383982.1 | 0.0 | PREDICTED: uncharacterized protein LOC103971641 | ||||
Refseq | XP_009383983.1 | 0.0 | PREDICTED: uncharacterized protein LOC103971641 | ||||
TrEMBL | M0RST5 | 0.0 | M0RST5_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P16550_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12431 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75710.1 | 2e-77 | C2H2-like zinc finger protein |